Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1332 ATGCCTCTATATGAGTTATTCCGGCTGGCTAGAGATAAGCTTGATAAAGAGATCAACAACACACGTGTAGCTGAACAACCATCCTCGCCTGAGGATGATTTTTTTGAGCTGGTTTGGGAGGGTGGTCAAATTTCTAGCCAGGGACAGTCCAGTAGATCTAGAAGGAGCCCATCTTCCAGGAGTTTGCCATCTCATTGCATACCATCTCACAGTCCCAAAGGTCGAGAAAAAGATGCAGGTATAGGATATGGTAACAACACAAAGATGGGAAAGTTTGGGGATTTAGACCCTGAATTGAATGAGATTCCAATGTCAGTGTCGTCGCGTGAAGTGGGTTTGAATCAAGATGAAGAATTGATGCCTTGGTTGGATTATTCAATGGATGGCTCTTTGCAACATGAATATGGTTCTGATTTCTTACATGAATTATCTGGGGTCACGGAACATGACCTCACCGCCTCCAATAATTATACTCTATTGGATAAAAGAAGTACTGGAAATCAGGTATTTAGGGAACCTTATAAAAATGCTGCGGAATCAGGGAATGTTTCTAAGGGTTCTTCAGCTGAACAGGTTGAGAATGCTAGACCTAAAGCTAACACCACCCAGTTATACCCTCCATCATTAGTAGCATCCAGAGCATCAGAAATAACTGAAAATAACAACACAAGTAACATGAGCCAGAATGTGCCTTATGGTGAAATTGCTCAGATTCCATCTTCCTCAAGTGATTTTTCTAGCTTGAAGGTGCAGAGACAAGATCATGTAATGCCTCCAAACAATGGTTCCGCGGTAATGAATTTCTCCCATTTTGCAAGGCCTGCTGCTATCGTTAGAGCCAATCTTCAGAACATTAGCTTGAAGTCCGGTTCATCTTCAGCGAGATCAGACAGTGTGGGAGTTAAGAATAAAGGTGCTGCTTCAACTAGCTTCAATCCTCCTGAATCAACTCTCGTTGATTCAAATGGCGAATGTCCAAAGGAATTAACCATGCACAGCCAGAAGGTTGTTGCACAATCCAAGGCTGATTTGAAACCTTTGCTGCCAAAATCTCTTGAACAGAATGCTGTAGTTTCTAAACAGACAGAACCTGCTTGCAAAGAGAGTGCTGTTAAGACTGATCAAACTTCCAAACAAGTTATTGCTGAAAATGGTGCTAAAGGACCGACGGCTGCTGAAAGAAGTGCGGAGCCAGCAGTAGCCTCTTCCTCTGTTTGCTCTGGCAATGGTATAGACAGATGTTCAAATGATCCAAATCAAAATTTGAAGCGGAAAAGTAGAGACACTGAGGACTCAGAGTATCATAGTGAAGATGCTGAAGAAGAATCAGTGGGTGTTAAAAAGGCATCTGCTGGACGAGGTACCGGTTCCAAGAGAAGCCGTGCAGCTGAAGTGCATAATCTATCTGAAAGGAGACGAAGAGACAGGATCAACGAGAAGATGCGTGCATTGCAAGAACTCATACCAAATTGCAATAAGGTGGATAAAGCTTCTATGCTGGATGAGGCAATTGAGTATCTTAAAACACTTCAGCTCCAAGTTCAAATGATGTCAATGGGAGCTGGTTTTTATATGCATCCAATGATGTTACCTGGAGGAATGCAGCACATGCATACACCGCATATGGCTCCATTTTCACCTATGGGTGTTGGCATGCACATGGGGTTGGGTATGGGTTTTGGGATGGGAATGCCTGACATGAATGGTGGATCTTCTAGATTCCCAATGATTCAGGTCCCCCAAATGCACGGAACTCATGTCCCTGTTGCGCATATGTCTGGACCAACTGCTTTACATGGGATGGCCAGATCAAATTCTCCAGGGTTTGGGCTTCCAGGTCAGGGACTTCCCATGCAAATGCCACATGCTCCCGGATTTCCTTTTCAAGGAGGGCCACTTATGAACTCATCAGCTCCGGTTCTGCATGCATGTGGGCCAGCAGGACTTGTTGGAACCGGGGATTCAGCTTCAGCATCTGGCTTAAAGGATCCAATGCCAAATGTCGACTCACAAGTTAAGCAAAGCACCGGCAGCCGTGACACAACAAGTCAGATGCCTCCCCAGTGCGAAACAGCAACTGTTGGATTTGAACAGTCAGCTTTGGTGCACAATAGTGGTCAGGCCTCTTTGGCTAATGACAGTGGCGCTGTTAATGGCAAACAAGGTTATGATTGA 2175 0.4464 MPLYELFRLARDKLDKEINNTRVAEQPSSPEDDFFELVWEGGQISSQGQSSRSRRSPSSRSLPSHCIPSHSPKGREKDAGIGYGNNTKMGKFGDLDPELNEIPMSVSSREVGLNQDEELMPWLDYSMDGSLQHEYGSDFLHELSGVTEHDLTASNNYTLLDKRSTGNQVFREPYKNAAESGNVSKGSSAEQVENARPKANTTQLYPPSLVASRASEITENNNTSNMSQNVPYGEIAQIPSSSSDFSSLKVQRQDHVMPPNNGSAVMNFSHFARPAAIVRANLQNISLKSGSSSARSDSVGVKNKGAASTSFNPPESTLVDSNGECPKELTMHSQKVVAQSKADLKPLLPKSLEQNAVVSKQTEPACKESAVKTDQTSKQVIAENGAKGPTAAERSAEPAVASSSVCSGNGIDRCSNDPNQNLKRKSRDTEDSEYHSEDAEEESVGVKKASAGRGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGFYMHPMMLPGGMQHMHTPHMAPFSPMGVGMHMGLGMGFGMGMPDMNGGSSRFPMIQVPQMHGTHVPVAHMSGPTALHGMARSNSPGFGLPGQGLPMQMPHAPGFPFQGGPLMNSSAPVLHACGPAGLVGTGDSASASGLKDPMPNVDSQVKQSTGSRDTTSQMPPQCETATVGFEQSALVHNSGQASLANDSGAVNGKQGYD* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1332 724 MobiDBLite consensus disorder prediction 654 689 - -
Lja5g1332 724 PANTHER TRANSCRIPTION FACTOR PIF3 1 685 - -
Lja5g1332 724 MobiDBLite consensus disorder prediction 43 66 - -
Lja5g1332 724 Pfam Helix-loop-helix DNA-binding domain 465 511 IPR011598 GO:0046983
Lja5g1332 724 MobiDBLite consensus disorder prediction 176 202 - -
Lja5g1332 724 MobiDBLite consensus disorder prediction 400 417 - -
Lja5g1332 724 MobiDBLite consensus disorder prediction 418 447 - -
Lja5g1332 724 MobiDBLite consensus disorder prediction 359 469 - -
Lja5g1332 724 MobiDBLite consensus disorder prediction 359 383 - -
Lja5g1332 724 Gene3D - 456 519 IPR036638 GO:0046983
Lja5g1332 724 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 461 510 IPR011598 GO:0046983
Lja5g1332 724 MobiDBLite consensus disorder prediction 288 325 - -
Lja5g1332 724 MobiDBLite consensus disorder prediction 668 689 - -
Lja5g1332 724 MobiDBLite consensus disorder prediction 704 724 - -
Lja5g1332 724 SMART finulus 467 516 IPR011598 GO:0046983
Lja5g1332 724 MobiDBLite consensus disorder prediction 180 202 - -
Lja5g1332 724 MobiDBLite consensus disorder prediction 43 82 - -
Lja5g1332 724 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 458 523 IPR036638 GO:0046983
Lja5g1332 724 PANTHER TRANSCRIPTION FACTOR PIF3 1 685 IPR044273 GO:0003700|GO:0006355
Lja5g1332 724 CDD bHLH_AtPIF_like 461 523 - -
Lja5g1332 724 MobiDBLite consensus disorder prediction 288 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1332 Lja-Chr5 13355836 13359609 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1332 1 590 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 37.438 2.68e-73 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja5g1332 HLH 7.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1332 K12126 - gmx:100794974 971.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1332 5 13355836 13359609 Lja5g1332 5 13355836 13359609 ECH