Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1330 ATGGGAAGACACTCTTGCTGCTACAAGCAGAAGCTACGCAAAGGTCTCTGGTCTCCAGAGGAAGATGAAAAGCTCTTGAATCACATCACCAAACATGGCCATGGATGCTGGAGCTCCGTCCCAAAACTAGCTGGTTTGCAGAGGTGTGGGAAGAGCTGCAGGTTGAGGTGGATAAATTACCTGAGGCCTGATTTGAAGAGAGGAGCATTCTCACAACAGGAAGAGAATTTGATCATTGAACTCCATGCCGTCCTTGGCAACAGGTGGGCTCAGATTGCAGCACAGTTACCAGGAAGAACTGACAATGAGATTAAAAATCTGTGGAATTCATGCCTTAAGAAGAGGCTCAGGCAAAGAGGCATTGACCCAAGCACCCACAAGCCTCTCTCTGAGGTTGAGAATGATAACAAGGACAACAAGCCATTCACAGCCAACAAAAGCAACCAGAAAGCATCCAATGAAGTGATGAGTTTTGTTGAGCCACCAGAACCCAAGATCAACAACAGTAGTAGCAGGTTGAGCAGCACCCCAAACACCACCCAGGAATTGTTCCTAGATAGTTGCAGAACATCTGACATGGCAGGGTGCTTTTCTTTCCAAAACTTGAACTATGGACAGAACATGGGGCTCACTGCAAATCCCAGTTCATCTTTTTGCTTCACACCAACCTCAGACCTCAATTCTACCATAAACTCCACCATGCTCCATTCTGTTTCAAGTTCTATTTTCCCAACAACATATGCAAAGCCCACTACTCTTAGTTTCCAATCCAGTAACAACCCTTCTTCCATATCCAGTGATGGGGTTCACAACTGGGAAACCAGTAACAGCTTCAGCAACAGTAACAACACAAACAAAAGCAATGGGAGCAGCATTAGCAGCACAAATTTCCTTGACAACAGCAATCTAATTTGGGGGCTGGCAGAGTCATCTATGAAGGTTGGTAAAGATGCTCATGCTCATTTACCTCTACAAGCAGAAGAACAAGAAGAGATGAAATGGTGTGAGTATCTTAACAACCCATTTCTTATGGGAAACACAGTGCAGAATAATCAAGCCTCTCAATCTATTTACAGCACTGAGGCTAAACCAGAAACAGGATTCATGACAGATGAGTCATGTGCTAGTTGGAACCAGCACCCATCACCAGCTTTTCAAAGTTCAGATATATATACAAAGGATCTGCAGAGATTTTCTGTGGCTTTTGGACAAACCCTGTAG 1221 0.4447 MGRHSCCYKQKLRKGLWSPEEDEKLLNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENLIIELHAVLGNRWAQIAAQLPGRTDNEIKNLWNSCLKKRLRQRGIDPSTHKPLSEVENDNKDNKPFTANKSNQKASNEVMSFVEPPEPKINNSSSRLSSTPNTTQELFLDSCRTSDMAGCFSFQNLNYGQNMGLTANPSSSFCFTPTSDLNSTINSTMLHSVSSSIFPTTYAKPTTLSFQSSNNPSSISSDGVHNWETSNSFSNSNNTNKSNGSSISSTNFLDNSNLIWGLAESSMKVGKDAHAHLPLQAEEQEEMKWCEYLNNPFLMGNTVQNNQASQSIYSTEAKPETGFMTDESCASWNQHPSPAFQSSDIYTKDLQRFSVAFGQTL* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1330 406 MobiDBLite consensus disorder prediction 119 154 - -
Lja5g1330 406 SMART sant 13 63 IPR001005 -
Lja5g1330 406 SMART sant 66 114 IPR001005 -
Lja5g1330 406 Gene3D - 68 151 - -
Lja5g1330 406 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lja5g1330 406 CDD SANT 17 61 IPR001005 -
Lja5g1330 406 MobiDBLite consensus disorder prediction 119 140 - -
Lja5g1330 406 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Lja5g1330 406 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja5g1330 406 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja5g1330 406 PANTHER HOMEODOMAIN-RELATED 1 399 - -
Lja5g1330 406 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lja5g1330 406 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja5g1330 406 Gene3D - 11 67 - -
Lja5g1330 406 PANTHER MYB DOMAIN PROTEIN 55 1 399 - -
Lja5g1330 406 CDD SANT 69 109 IPR001005 -
Lja5g1330 406 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1330 Lja-Chr5 13326017 13328248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1330 1 406 MYB Transcription Factor Family AT1G09540 49.406 2.03e-119 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja5g1330 Myb_DNA-binding 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1330 K09422 - gmx:100788976 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0505 1 4535424 4537038 Lja5g1330 5 13326017 13328248 ECH
Lja5g1330 5 13326017 13328248 Lja1g0505 1 4535424 4537038 ECH
Lja5g1330 5 13326017 13328248 Lja5g1330 5 13326017 13328248 ECH
Lja1g0505 1 4535424 4537038 Lja5g1330 5 13326017 13328248 PCT