Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1326 ATGGGTATCAAGGGTTTAACAAAGCTCTTAGCTGACAACGCCCCCAAATGCATGAAGGAGAACAAATTCGAGAGCTACTTCGGCCGCAAAATCGCCATCGACGCCAGCATGAGCATTTACCAGTTCCTTATTGTTGTAGGACGAAGCGGAGCTGAAACACTAACTAACGAAGCCGGCGAAGTTACTAGTCATTTGCAAGGGATGTTTACGCGGACGATTAGACTTTTAGAATCCGGGATGAAGCCAGTATATGTTTTTGATGGGAAGCCCCCGGATATGAAGAAACAAGAGCTTGCAAAACGTCTCTCGAAGAGAGCTGAGGCTACTGAGGATTTGTCAGAAGCCTTAAAGGCTGACAATAAGGAAGATATTGAAAAATTCAGTAAACGGACAGTGAAGGTGACAAAGCAGCATAATGAAGACTGCAAAAAACTCTTAAGACTCATGGGAGTGCCGGTCGTAGAGGCTCCCTCAGAAGCAGAGGCTCAATGTGCTGCTCTTTGCAAAGCTGGAATGGTTTATGCTGTGGCTTCTGAAGACATGGATTCCTTGACGTTTGGAGCTCCTAAATTTCTTCGCCATCTAATGGATCCTAGCTCGAAAAAAGTTCCTGTGATGGAATTTGAAGTTGCGAAGATTTTGGAGGAGTTAAATCTGACCATGGACCAATTTATTGATTTGTGCATTCTTTCTGGGTGTGATTATTGTGATAACATTCGAGGGATTGGGGGCCAAACAGCTTTGAAGCTCATCCGTCAACATGGTTCTATCGAAAATATTCTGGAGAACATAAACAAAGAAAGGTACCAGATACCAGAGGATTGGCCATATCAGGAGGCTCGACGGCTTTTTAAGGAACCAATGGTCACAACTGGAGACGATGAACTAAATCTTAAGTGGTCAGCTCCAGATGAAGAAGGATTAATAACATTTCTGGTTAATGAAAATGGGTTCAACAGTGACAGGGTGACAAAGGCAATAGAAAAAATTAAAGCTGCAAAGAACAAGTCATCACAAGGCCGTTTGGAGTCATTCTTTAAGCCAGCTCCAAGTTCATCTGTACCTATCAAACGGAAGGAAAGCAAATGCATGCTTAGATCTTTCAAACCAGCAATTGAGCATAAGATGTTCTCTCTGCAACTTCCTAACTGGTCAAGGCCCATGGTTTTTGGCAAGTTGAGCTTACAATATAATCTGAGTTCCAATGTATCTGTGCCATTGTGTAGAGGTGTCCATATTGGTGCCTGA 1248 0.4311 MGIKGLTKLLADNAPKCMKENKFESYFGRKIAIDASMSIYQFLIVVGRSGAETLTNEAGEVTSHLQGMFTRTIRLLESGMKPVYVFDGKPPDMKKQELAKRLSKRAEATEDLSEALKADNKEDIEKFSKRTVKVTKQHNEDCKKLLRLMGVPVVEAPSEAEAQCAALCKAGMVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDNIRGIGGQTALKLIRQHGSIENILENINKERYQIPEDWPYQEARRLFKEPMVTTGDDELNLKWSAPDEEGLITFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPAPSSSVPIKRKESKCMLRSFKPAIEHKMFSLQLPNWSRPMVFGKLSLQYNLSSNVSVPLCRGVHIGA* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1326 415 SMART 53exo3 29 301 IPR002421 GO:0003677
Lja5g1326 415 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 380 IPR006084 -
Lja5g1326 415 Pfam XPG N-terminal domain 1 108 IPR006085 GO:0004518
Lja5g1326 415 SUPERFAMILY PIN domain-like 2 234 IPR029060 -
Lja5g1326 415 SMART xpgineu 147 219 IPR006086 GO:0004518
Lja5g1326 415 CDD PIN_FEN1 4 332 - -
Lja5g1326 415 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 167 187 IPR006084 -
Lja5g1326 415 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Lja5g1326 415 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 224 239 IPR006084 -
Lja5g1326 415 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Lja5g1326 415 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Lja5g1326 415 SMART HhH_4 221 254 IPR008918 GO:0003677|GO:0003824
Lja5g1326 415 Coils Coil 99 119 - -
Lja5g1326 415 CDD H3TH_FEN1-Euk 222 290 - -
Lja5g1326 415 Pfam XPG I-region 150 234 IPR006086 GO:0004518
Lja5g1326 415 Hamap Flap endonuclease 1 [fen]. 1 347 IPR023426 GO:0016788
Lja5g1326 415 Gene3D - 2 218 - -
Lja5g1326 415 Gene3D - 219 286 - -
Lja5g1326 415 PANTHER FLAP ENDONUCLEASE 1 1 380 - -
Lja5g1326 415 SMART xpgn3 1 108 IPR006085 GO:0004518
Lja5g1326 415 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 219 354 IPR036279 -
Lja5g1326 415 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1326 1 411 Core DNA Replication Machinery Family AT5G26680 78.398 0.0 678
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1326 K04799 - pvy:116119658 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1326 5 13291941 13297456 Lja5g1326 5 13291941 13297456 ECH