Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1318 ATGGCTTCTTCTTCTTCTTCCGTCGCGGTTGTTTCCTCCACATACCAAACCCCTCTTCTCGAACTCCTCAAACGACCAACCACCGCAACAGCCTTCATTTCTCTCGACAACCGCTCCCGCTTCAGCTCCGTTCTTCTCCGAACTTCCAACCTCAACAGGACCCGCCTCCGCCTTGTTTCTTCAGCCGTTGCCACCCCGAACTCCTCCGTCCTCACCGCCGAAGAAGCCTTCAAGGGTCTTGCTCTTGACGACGTTAACGCTGACGGGTATGACCTTGCTCCTCCCACCACTGTCAGCAACGACGAGCTCGACATTTCTAAGCTGGGTTTGCCTTCTGAACTCGTTCGTTCGCTTGTCAACCGTGGAATCACTAGTCTTTTCCCCATTCAGAGAGCTGTGTTAGTGCCTGCACTGGAAGGGAAAGATATCATTGCTAGAGCAAAGACTGGAACTGGAAAGACCTTAGCATTTGGAATTCCAATTATCAAAGGTGTCACTGATGATTCACAAAGTCCTCAGAGGCGGTCTGGGCGTCTTCCTAAGGCGTTGGTACTTGCGCCAACTAGGGAGTTAGCGAAGCAGGTCGAGAAGGAGATAAAAGAATCTGCACCTTACCTGAGCACAGTCTGTGTTTATGGTGGTGTTGCTTATGCAACACAGCAAAATGCACTTTCGCGTGGTGTTGATGTTGTGGTTGGAACACCTGGCAGAATAATTGACCTAGTAAATGGGAACAGCCTTAGACTGACTGAGGTTCAGTATTTGGTCCTTGATGAAGCTGATCAGATGCTTGCTGTTGGGTTCGAGGAGGATGTTGAAACAATTTTACAAACGGTCCCAACTGGGCGGCAGACCATGCTTTTTTCTGCAACCATGCCGGGTTGGGTGAAGAAATTGTCAAGAAAATATTTGAACAAACCATTGACAATTGATTTGGTCGGTGAGGATGAAGAGAAGCTTGCACACGGGATCAAGCTATATGCTGTATCAGCCACTACAAATTCAAAGCGGACAATGCTTTCCGATCTTGTAACTGTCTATGCAAAGGGTGGGAAGACTATTGTTTTCACGCGGACAAAAAAAGATGCTGATGAAGTATCATTGTCATTAACAAATAGTATAGCTTCTGAAGCACTGCATGGTGATATCTCTCAGCATCAGAGAGAGAGAACGTTGAATGGTTTCCGGCAAGGAAAATTCACAGTGCTTGTTGCCACTGATGTTGCCTCTCGTGGACTTGATATTCCTAATGTTGATTTGGTTATACATTATGAACTTCCCAATGATCCTGAGACTTTTGTACATCGCTCTGGTCGTACCGGTCGTGCAGGAAAAGAGGGTACTGCCATTCTGATGTATACCAGTAACCAGAGGAGAACTGTTAGATCCCTTGAGCATGATGTAGGCTGCAAATTTGAATTTGTTAGTCCACCAGCTACGCAGGAGATTTTGGAATCATCTGCCGAGCAAGTTGTTGCTGCACTTAGTAGAGTTCATCCTGAATCTGTTGAATTTTTCACCGCAACTGCACAAAAACTAGTTGAGGAACGAGGAACAAGTGTCCTTGCAGCTGCACTAGCACAACTGAGTGGGTTCTCTCGACCTCCATCATCCCGGTCTCTTATCAATCAGGAACAGGGATGCATTACATTACAACTAACTCGAGATCTAGATGCTCTTCATGGAAAATATCTTTCTGCTAGATCAGTCACTGGGTTTCTTTCTGATGTTTATTCTCCAGCTGCTGATGAAGTTGGAAAAATACATTTAATTGCAGATGAAAGGGTTCAAGGAGCTGTTTTTGATCTTCCGGAGGATATTTCTAGAGAGTTGCTCAAGAAGGACATACCCCCTGGAAACACTATTTCCTTGATCACCAAGTTACCTGCTTTGCAAGATGATGAACCTACAAGTGATTACTATGGGAGGTTTTCTGACAGAGGTCAAAGCAACCGGAGGGGGGGTTCTAGGGATCGGGGAGGTTTTAGAAGCTCCTCATCGGGATGGGGTGGGGACCGAAGCTCTGATGACGAGTTTGGCAATACATATGGGAGAGGGGGGAGAGGTGGGAGAGGTGGTAGAAGTTATGGATCCGGTAACAGCAGGTCTGGAATGGGAAGAAGAAGCAGTGGGGATGACTGGCTAATTGGAGGTGGACGATCAAGCAGGTCTTCACCATCGAACAGAGGCAGCAGTGGAGGTGCCTGTTTTAATTGTGGACAATCTGGGCATTTTGCAGCAGAGTGTCCCAAAAAACGGAACTCATTTTAG 2271 0.4681 MASSSSSVAVVSSTYQTPLLELLKRPTTATAFISLDNRSRFSSVLLRTSNLNRTRLRLVSSAVATPNSSVLTAEEAFKGLALDDVNADGYDLAPPTTVSNDELDISKLGLPSELVRSLVNRGITSLFPIQRAVLVPALEGKDIIARAKTGTGKTLAFGIPIIKGVTDDSQSPQRRSGRLPKALVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVAYATQQNALSRGVDVVVGTPGRIIDLVNGNSLRLTEVQYLVLDEADQMLAVGFEEDVETILQTVPTGRQTMLFSATMPGWVKKLSRKYLNKPLTIDLVGEDEEKLAHGIKLYAVSATTNSKRTMLSDLVTVYAKGGKTIVFTRTKKDADEVSLSLTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMYTSNQRRTVRSLEHDVGCKFEFVSPPATQEILESSAEQVVAALSRVHPESVEFFTATAQKLVEERGTSVLAAALAQLSGFSRPPSSRSLINQEQGCITLQLTRDLDALHGKYLSARSVTGFLSDVYSPAADEVGKIHLIADERVQGAVFDLPEDISRELLKKDIPPGNTISLITKLPALQDDEPTSDYYGRFSDRGQSNRRGGSRDRGGFRSSSSGWGGDRSSDDEFGNTYGRGGRGGRGGRSYGSGNSRSGMGRRSSGDDWLIGGGRSSRSSPSNRGSSGGACFNCGQSGHFAAECPKKRNSF* 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1318 756 CDD DEADc 114 311 - -
Lja5g1318 756 Pfam Helicase conserved C-terminal domain 338 444 IPR001650 -
Lja5g1318 756 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 339 484 IPR001650 -
Lja5g1318 756 SMART ultradead3 122 327 IPR014001 -
Lja5g1318 756 ProSiteProfiles Zinc finger CCHC-type profile. 736 751 IPR001878 GO:0003676|GO:0008270
Lja5g1318 756 SUPERFAMILY Retrovirus zinc finger-like domains 716 754 IPR036875 GO:0003676|GO:0008270
Lja5g1318 756 MobiDBLite consensus disorder prediction 635 744 - -
Lja5g1318 756 SMART helicmild6 364 444 IPR001650 -
Lja5g1318 756 CDD SF2_C_DEAD 324 453 - -
Lja5g1318 756 Pfam GUCT (NUC152) domain 531 632 IPR012562 GO:0003723|GO:0004386|GO:0005524
Lja5g1318 756 Gene3D - 725 755 - -
Lja5g1318 756 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 134 310 IPR014001 -
Lja5g1318 756 Pfam Zinc knuckle 735 751 IPR001878 GO:0003676|GO:0008270
Lja5g1318 756 MobiDBLite consensus disorder prediction 720 738 - -
Lja5g1318 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 464 IPR027417 -
Lja5g1318 756 Gene3D - 104 314 IPR027417 -
Lja5g1318 756 PANTHER - 56 748 - -
Lja5g1318 756 Pfam DEAD/DEAH box helicase 127 299 IPR011545 GO:0003676|GO:0005524
Lja5g1318 756 Gene3D - 325 528 IPR027417 -
Lja5g1318 756 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 56 748 - -
Lja5g1318 756 SMART c2hcfinal6 735 751 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1318 Lja-Chr5 13220796 13226414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1318 108 465 Eukaryotic Initiation Factors Gene Family AT1G72730 37.602 2.22e-66 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1318 - K16911 gmx:100815040 998.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0495 1 4455174 4461065 Lja5g1318 5 13220796 13226414 ECH
Lja5g1318 5 13220796 13226414 Lja5g1318 5 13220796 13226414 ECH
Lja1g0495 1 4455174 4461065 Lja5g1318 5 13220796 13226414 PCT