Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1309 ATGGCTTCTTCATTCTCAACGCAGTTGGTCCAAAGTCAGAACCTTCTTCCTCGTTTTCATCATATCCAGGGTAATTTTAGCCAAGATGTATCGAAGGTTCGACGGTCACATGTGGTCTGTAGCAGTATCCGATCTCAGCTTGGTTGCAGTAAAACATTGGCATCACGATCTCATTATGCTGCCAAGTTTCCTGTCACTCTAAAATCTGAAGGAAAATCAACCACATTTAGGAGAATGACATGCAATGCTAAGGAAAGTGCTCTGGAGCTGCAAGCCAAAGTGACAAGCAAAGTTTTCTTTGATGTAACAATTGGGGGTGAAGCTGCTGGCAGGATTGTTTTCGGCCTATTTGGAGACGTCGTTCCAAAAACAGCAGAGAATTTCCGAGCTTTGTGCACAGGAGAAAAAGGATATGGTTTCAAAGATTGCTACTTCCATCGTATAATCAAAGATTTCATGATTCAGGGAGGGGACTTCACTGAAGGAAATGGAACTGGTGGAATCAGTATCTATGGTGCTAAATTTGAAGATGAGAATTTTTCTTTGAAACATGTTGGTCCTGGAGTTTTAAGCATGGCAAATGCCGGTCCTAATACCAATGGTAGTCAATTTTTTATTTGCACTGTACAGACTCCATGGTTAGACAATCGGCATGTTGTGTTTGGGCATGTCATTGATGGAATGGATGTTGTGAGGACACTTGAGTCACAGGAGACAAGCAGGTCAGATAACAGCCCCCGGAAGCCATGCAAAATAGCAAATTCTGGAGAACTTCCTTTAGAGGGTTGA 789 0.4259 MASSFSTQLVQSQNLLPRFHHIQGNFSQDVSKVRRSHVVCSSIRSQLGCSKTLASRSHYAAKFPVTLKSEGKSTTFRRMTCNAKESALELQAKVTSKVFFDVTIGGEAAGRIVFGLFGDVVPKTAENFRALCTGEKGYGFKDCYFHRIIKDFMIQGGDFTEGNGTGGISIYGAKFEDENFSLKHVGPGVLSMANAGPNTNGSQFFICTVQTPWLDNRHVVFGHVIDGMDVVRTLESQETSRSDNSPRKPCKIANSGELPLEG* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1309 262 Gene3D - 82 261 IPR029000 -
Lja5g1309 262 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-3, CHLOROPLASTIC 57 261 - -
Lja5g1309 262 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 140 157 IPR020892 GO:0003755|GO:0006457
Lja5g1309 262 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 57 261 - -
Lja5g1309 262 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 99 257 IPR002130 GO:0000413|GO:0003755
Lja5g1309 262 CDD cyclophilin_ABH_like 96 256 - -
Lja5g1309 262 MobiDBLite consensus disorder prediction 236 262 - -
Lja5g1309 262 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 188 203 IPR002130 GO:0000413|GO:0003755
Lja5g1309 262 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 216 231 IPR002130 GO:0000413|GO:0003755
Lja5g1309 262 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 203 215 IPR002130 GO:0000413|GO:0003755
Lja5g1309 262 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 145 157 IPR002130 GO:0000413|GO:0003755
Lja5g1309 262 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 116 131 IPR002130 GO:0000413|GO:0003755
Lja5g1309 262 SUPERFAMILY Cyclophilin-like 90 258 IPR029000 -
Lja5g1309 262 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 100 255 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1309 Lja-Chr5 13160236 13163141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1309 110 252 U-box Gene Family AT5G67530 45.833 2.02e-29 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1309 K03768 - gmx:100526955 423.705