Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1303 ATGGGAAGACACTCATGCTGCTACAAGCAGAAGCTTAGGAAGGGTCTGTGGTCACCAGAGGAAGATGAGAAACTTCTGAGGCATATTACGAAGTATGGCCATGGATGTTGGAGTTCTGTGCCTAAGCAAGCAGGTTTGCAGAGGTGTGGTAAGAGCTGCAGGCTTAGGTGGATCAATTACTTAAGGCCTGATTTAAAAAGAGGAACATTCTCACAAGAAGAAGAAAATCTTATAATTGAACTTCATGCAGTACTAGGGAACAGATGGTCTCAAATTGCGGCGCAATTGCCGGGAAGGACCGACAATGAAATAAAGAATCTTTGGAACTCTTGCCTGAAGAAGAAGCTGAGGCAACAAGGTATAGACCCTGTCACTCATAAACCTTTACCACAGGGTGAGAATGGAGAGGAAATTCAAAATGTTAGGAGCCAAGAGAAAGCACCTCAACAATTATCCAATGAACTGAATTTGAACCTATTGAAATCAGAGAGTTCAAAATCAGATGCAGCTTCTTATGAGCAAAGAACATCTTCAATTTCCCCAAAGGCCTATGCACCTGAGAATATGGAAGGTTCTTGCAGCAAAGACATGTTCCTAGACAGGTTCATGAGTACTCAGCCCTCAGATTTGATGGGGAATTTTCCTCTTCAGATGAGTTATTCAAACACTGATTGTCTTCCAACCGATTCAAACACTAGTCATTGGTTCAGCCAAAGGCCTTTTGACATGAACTCTGAATTTCCTTTGAATGCAACTTCTCTTCTTACACCTACAACAAGCTTGTTTCTTCCTAGTTCTTTATGCTACAAGCCACTTTCTGTTGTTCCCTCTGACAATATTTCTGGATCCCATTACTGGGAAGCCAGTGCCTCCAATAATAGCAATAGCAGCAATAGAAGTAATAGCAGCACAGAATTGAGAAACAGCAACCACTTAAACTTTCAGAATAGTGCTCTTTCTTCTTGGGGATTGGCAGATTGTGGTGCCTCTACTAAAGAGTCCCAAATTCATATGATGGAAAACTTAAACCACTCAGCAGAAGCTAATAAATGGGATGAGTACCTTCACAATCCAATGTTAATGATGGGTTCTGTGCAAAATGAAGCTCCTGAATCTTTGTGCAATGAGATAAAGCCTCCCATGCATTTGGTGCCTGATACTTTAGGTTCCATTTTGCAGCAGCAAGAACCTTCCCAAACATCTAATATCTTTTCCAAGGATATTCAGAAGCTCAGAGCAGCATTTGGACACATGTAG 1257 0.4153 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQQGIDPVTHKPLPQGENGEEIQNVRSQEKAPQQLSNELNLNLLKSESSKSDAASYEQRTSSISPKAYAPENMEGSCSKDMFLDRFMSTQPSDLMGNFPLQMSYSNTDCLPTDSNTSHWFSQRPFDMNSEFPLNATSLLTPTTSLFLPSSLCYKPLSVVPSDNISGSHYWEASASNNSNSSNRSNSSTELRNSNHLNFQNSALSSWGLADCGASTKESQIHMMENLNHSAEANKWDEYLHNPMLMMGSVQNEAPESLCNEIKPPMHLVPDTLGSILQQQEPSQTSNIFSKDIQKLRAAFGHM* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1303 418 PANTHER MYB DOMAIN PROTEIN 55 1 412 - -
Lja5g1303 418 PANTHER HOMEODOMAIN-RELATED 1 412 - -
Lja5g1303 418 Gene3D - 11 67 - -
Lja5g1303 418 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja5g1303 418 CDD SANT 17 61 IPR001005 -
Lja5g1303 418 SMART sant 13 63 IPR001005 -
Lja5g1303 418 SMART sant 66 114 IPR001005 -
Lja5g1303 418 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja5g1303 418 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja5g1303 418 Gene3D - 68 147 - -
Lja5g1303 418 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja5g1303 418 MobiDBLite consensus disorder prediction 119 148 - -
Lja5g1303 418 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Lja5g1303 418 CDD SANT 69 109 IPR001005 -
Lja5g1303 418 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja5g1303 418 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1303 Lja-Chr5 13110058 13111930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1303 1 417 MYB Transcription Factor Family AT1G09540 42.494 3.86e-92 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja5g1303 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1303 K09422 - gmx:100782199 598.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0483 1 4330511 4332622 Lja5g1303 5 13110058 13111930 PCT