Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1300 ATGGCTGCTACTGGCAAGAAAGCTCTTCATCATTTTGTAGTGATTAAAGGATCATCACATGCTCTCACAACACTTCAAGGACAAAAACCATTGATTTCTGATGCACAGTCAGAAGCTGTTGTTGGTCATAACAAAACCTCAAGCTTAGCCAGACTAAAAGCAAAGGGAAAAGCTCATTCTAACTATCATGATGAACCCTTGCTAGTATCTTCTTCCTTTGGATACTCAAATAACACAAATCTTAAAAGGAAACATGATGAGGCTACATGTTTAAGTGATAATGATGAGGAACCTGAATATGCAGTGAAGGAGAAGCTTGCTGGGAAGGGCACCAAAGTCAAGAGAAGTAGGAATGCAGACACTCATAGTTTATATGAAAGGAAGCGAAGAGATAAGATCAACAAGAAGATGCGTATATTGAAAGGGCTCATACCTAATTGCAATAAGAAGGATAAAGTTTCAATGCTTGATCATGCCATCGAATATCTTAAGACCCTCAAACTTCAATTACAGATTATGTCAATGGGTGGTGGGCTTTGTATGCCTCTTATGATGTTATCTGCTGCAACTAATCAAATGATCAACACAACCCATTTACCTCAGTTTATGGGAGCTGGAATGGGCTTCAGGCCTCAGTTCCCTATTGCACCTTTGCCTGGTGTCACTGATAATAATGGAGTTGGGATGTTTGGTTTCCCTAACCAAGTTCCACCCATGCCAAATTGTCATGCACCTTTCATTCCTATGGCTGGAAATACTCATACACAACCACTTGTGGCAACTAGCACAGCTACCAAATCGGCTGAAAACTGCTGCTCAGTCTCCAAGAACTCATATCTTCATGGACAGGCTGAACATGCAATAAAGCAATCATTGAATCAGGAACAGATTGAAAAAATTTCAGACAAGTGTTGA 915 0.4022 MAATGKKALHHFVVIKGSSHALTTLQGQKPLISDAQSEAVVGHNKTSSLARLKAKGKAHSNYHDEPLLVSSSFGYSNNTNLKRKHDEATCLSDNDEEPEYAVKEKLAGKGTKVKRSRNADTHSLYERKRRDKINKKMRILKGLIPNCNKKDKVSMLDHAIEYLKTLKLQLQIMSMGGGLCMPLMMLSAATNQMINTTHLPQFMGAGMGFRPQFPIAPLPGVTDNNGVGMFGFPNQVPPMPNCHAPFIPMAGNTHTQPLVATSTATKSAENCCSVSKNSYLHGQAEHAIKQSLNQEQIEKISDKC* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1300 304 SMART finulus 123 172 IPR011598 GO:0046983
Lja5g1300 304 Gene3D - 112 174 IPR036638 GO:0046983
Lja5g1300 304 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 117 166 IPR011598 GO:0046983
Lja5g1300 304 CDD bHLH_AtPIF_like 117 179 - -
Lja5g1300 304 PANTHER TRANSCRIPTION FACTOR PIF3 34 277 IPR044273 GO:0003700|GO:0006355
Lja5g1300 304 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 116 176 IPR036638 GO:0046983
Lja5g1300 304 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 34 277 - -
Lja5g1300 304 Pfam Helix-loop-helix DNA-binding domain 121 166 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1300 Lja-Chr5 13065521 13067839 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1300 67 256 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46970 36.207 9.29e-30 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja5g1300 HLH 4.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1300 K12126 - gmx:100818543 289.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0481 1 4322618 4325052 Lja5g1300 5 13065521 13067839 PCT