Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1296 ATGGGCAAACCCTCTTCTTCTTCTTCCTCCTCATCTACTAGCAGGAGTAGAAACTCTGTTTTCTCCTCTGCTTCCTCTCTCACACACCAACATACTGAAGGCCTTCAAACAGATCTTAGGCTTGGACTAGGCATTTCCACCACTCAACATGTTGGCTCTTCTACTTCAAGGGGGCATAGTTGGCAACCAATGCAACCAGATCTAAGTAGTTCACAAGCTGCTGAAGTGAATGATTGCAGTGATCATAACAGCTTCTTTGTGAAGGTCTACATGGAAGGCATTCCAATTGGAAGAAAACTGAATTTACTAGTTCACAATGGGTACCAAGAACTAGTAAAGACTCTTGAACATATGTTTGACACTACCATTCTATGGGGGACTGAGATGGATGGAGTGCAATCAGAGAGGTGCCATGTGCTAACTTATGAAGATGGAGAAGGAGACTTGATTATGGTTGGAGATGTTCCTTGGGAAATTTTCTTATCAGCTGTAAAGAGGTTGAAGATCACCCGGGTTGACACATTTGGTTGTTAA 534 0.4288 MGKPSSSSSSSSTSRSRNSVFSSASSLTHQHTEGLQTDLRLGLGISTTQHVGSSTSRGHSWQPMQPDLSSSQAAEVNDCSDHNSFFVKVYMEGIPIGRKLNLLVHNGYQELVKTLEHMFDTTILWGTEMDGVQSERCHVLTYEDGEGDLIMVGDVPWEIFLSAVKRLKITRVDTFGC* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1296 177 SUPERFAMILY CAD & PB1 domains 80 169 - -
Lja5g1296 177 Pfam AUX/IAA family 72 171 IPR033389 -
Lja5g1296 177 PANTHER AUXIN-INDUCED PROTEIN 4 176 - -
Lja5g1296 177 MobiDBLite consensus disorder prediction 48 72 - -
Lja5g1296 177 Gene3D - 78 176 - -
Lja5g1296 177 MobiDBLite consensus disorder prediction 1 33 - -
Lja5g1296 177 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 176 IPR003311 GO:0005634|GO:0006355
Lja5g1296 177 ProSiteProfiles PB1 domain profile. 84 174 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1296 Lja-Chr5 13039452 13041216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1296 88 169 B3 DNA Binding Superfamily AT4G23980 36.585 1.32e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lja5g1296 AUX_IAA 6.7e-28 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1296 K14484 - gmx:100784866 265.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0480 1 4314317 4315364 Lja5g1296 5 13039452 13041216 PCT