Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1288 ATGAGTGTGGAAGAAGATGGAGTGAATAATAAGCATGATGAGACAACGAATCCTGCAGAGACTAGCACAAATGGGGAGAAGGAAGGAAAGAGCAAACAGAAAGAAAAACAGGAGACAGTTCCATTTCACAGATTGTTCTCATTTGCAGACTCCACCGACATTCTGTTGATGTGTATTGGAACCATTGGTGCTGTTGGAAATGGAATGGGTTTGCCTCTCATGACATTGCTCTTTGGTCAAATGATTGATAGCTTTGGAAGTAACCAGAGAAACCCTGATGTAGTGGAACAAGTGTCCAAGGTCTCTTTGAAATTTGTATACTTGGCAATAGGATGTGGGGTTGCAGCTTTCCTTCAGGTGTCATGTTGGATGGTCACAGGGGAAAGACAAGCTGCAAGAATAAGGGGATTGTATTTGAAAACTATACTGAGACAAGATGTGGCTTTCTTTGATAAGGAAACAAACACAGGAGAGGTGATAGGGAGAATGTCAGGGGACACGGTTCTCATACAAGATGCCATGGGTGAGAAGGTTGGGAAATTTCTGCAGCTAATAGCAACATTCATTGGGGGATTTATCATTGCCTTCATCAAAGGGTGGCTTCTTACTGTTGTCATGTTGTCCACTCTTCCACTTCTTGTTGTGTCAGGTGCTGCCATGGCTGTCATCATAGGCAGGATGGCTTCTCGAGGTCAAACTGCTTATGCGAAAGCAGGACATGTAGTTGAACAGACAATTGGCTCAATAAGAACGGTTGCATCCTTTACTGGGGAAAAGCAAGCAGTAACTGATTATAGCAAATTTCTCGTAGATGCTTACAAATCAGGAGTTCATGAAGGCTCCACAGCTGGAATAGGCCTAGGAACAGTTATGTTTGTAATTTTTGGTGGTTATGCTTTGGCTGTGTGGTTTGGTGCAAAGATGATAATGGAAAAAGGATATAATGGCGGCACAGTGATTAATGTGATTATTGCAGTTTTAACTTCCTCCATGTCTCTTGGACAGGCATCTCCTAGCTTGAGTGCTTTTGCTGCAGGCCAGGCTGCAGCTTACAAAATGTTTGAAACAATTAAAAGGAAGCCAGAGATAGATGCATCCGATCCTAGTGGAAAAATATTAGAGGACATTAGAGGTGAAGTAGAGTTAAGGGATGTTTATTTCAGTTATCCAGCCAGACCGGAGGAGCTGATATTCAATGAATTCTCTCTTCATATATCTAGCGGTACAACTGCAGCATTAGTTGGACAAAGTGGAAGTGGCAAGTCCACAGTCATCAGTTTGATAGAAAGATTTTATGATCCACATGCAGGTGCAGTTCTTATTGATGGTATTAACCTGAAAGAATTTCAGCTTAGGTGGATCAGAGGAAAAACTGGCCTTGTTAGTCAGGAGCCTGTGTTGTTTGCATCTAGCATTAAGGAAAATATTGCATATGGAAAGGATGGAGCAACGGTTGAAGAGATAAGACATGCATCTGAACTTGCAAATGCTGCTAAGTTCATTGATAAATTGCCTCAGGGATTGGACACAATGGTTGGTGAGCATGGAACTCAGTTATCTGGTGGACAAAAGCAGCGCATTGCGATTGCAAGAGCAATCCTAAAAGATCCAAGAATTCTACTTCTAGATGAAGCAACAAGCGCACTTGATTCGGAGTCTGAAAGGGTAGTGCAAGAGGCTCTAGACAGGATCATGGGAAACAGAACTACAATTATTGTGGCACATCGCTTGAGCACTGTGAGGAATGCTGATATGATTGCTGTAATTCACAGAGGGAAGATGGTCGAAAAAGGGACACACTCAGAATTACTCAAGGATCCCGAGGGAGCTTACTCTCAATTAATACGATTACAGGAAGTAAACAAGGTATCAGAAGAAACTGCAGACCATCACAACAAGAATGAACTTTCTGTAGAATCATTTAGACAATCTAGTCAAAGGAGATCACTTCAAAAATCCATTAGCCGAGGATCATCTTTAGGGAACAGTAGCCACCATTCATTTTCAGTTTCTTTTGGTCTACCTACAGTGGTTAATGCCTCTGATCCTGAACAAGAAAACTTACAACCCAAGGAAAAAGCACCAGAGGTTCCACTACGTCGCCTTGCTTCCCTCAACAAGCCAGAGATTCTTGTTCTTTTCCTAGGATGTTTAGCTGCAGTAGGAAATGGTGTTATATTTCCAATATTTGGCGTATTGATTTCCAGTGTCATCAAAACATTCTATGAACCATTCGATGAGATGAAGAAGGATTCCAAGTTTTGGGCAATAATGTTTATGATCCTTGGTATAGCATCATTGCTAGTGATTCCAGCACGATCTTACTTTTTCTCTGTGGCTGGATGCAAGTTAATCCAACGTATCAGGTTAATATGTTTTGAGAAGGTGGTTAACATGGAGGTCAGTTGGTTTGATGAGCCTGAGAACTCGAGCGGTGCTGTTGGTGCAAGGCTCTCAGCAGATGCTGCTTCTGTTCGTGCCCTTGTTGGTGATGCTCTAGGACTATTAGTTCAAAATATAGCAACTTTATTGGCAGGTTTGATTATTGCATTCGTTGCAAGCTGGGAGCTAGCATTTATTATTCTTGTCTTGATCCCCTTGATTGGAGTAAATGGCTATGTTCAAATGAAATTCATGAAGGGATTCAGCGCAGATGCAAAGATGATGTATGAGGAAGCAAGCCAAGTTGCTAATGATGCAGTTGGGAGCATAAGAACTGTAGCGTCTTTCTGTGCTGAGGATAAGGTTATGGAACTATACAGGAAGAAATGTGAGGGACCTATGAAAACTGGGATAAGGCAGGGTGTGATAAGTGGATCAGGATTCGGGGTTTCATTTTTCTTACTATTTTGTGTCTACGCAACCAGTTTCTATGCAGGAGCTAGACTTGTGGATGCTGAGAAGGCAACATTCTCAGATGTTTTTCGGGTTTTCTTTGCTTTAACCATGGCAGCTATTGGCATTTCTCAATCAAGCTCCTTTGCTCCGGACTCAAGCAAAGCCAAGTCAGCTACCGCTTCTATTTTTGGAATGATTGACAAGAAGTCAGAGATTGATCCAAGTGATGAGTCTGGTACCACCCTTGACAATGTTAAAGGGGAAATTGAGCTTCGTCATGTGAGCTTCAAGTATCCATCTAGGCCGGATATACAAATTCTCCGAGACCTCAACTTGGCTATCCATTCTGGCAAGACGGTGGCTCTTGTTGGTGAAAGTGGGAGTGGGAAATCCACAGTGATTGCCTTGTTGCAGAGATTTTATAATCCTGATTCAGGTGAAATCACTCTTGATGGGATAGAAATCCGAGAGTTACAACTCAAGTGGTTAAGGCAACAGATGGGGCTTGTGAGCCAAGAGCCAGTGTTATTCAATAACACTATCCGTGCCAACATTGCCTATGGAAAAGGAGGCAATGCAACTGAAGCAGAAATCACGTCTGCATCAGAACTTGCCAATGCACACAGGTTTATCAGTGGGTTACAACAGGGTTATGATACCATAGTGGGAGAAAGGGGGACCCAATTATCTGGTGGGCAGAAGCAAAGGGTTGCTATTGCACGTGCCATCATCAAAAGTCCAAAGATATTGCTCCTAGATGAGGCCACAAGTGCATTAGATGCAGAATCAGAAAGAGTTGTTCAAGATGCATTGGACAAAGTCATGGTTAATAGGACCACAGTGGTGGTGGCACATCGTTTGTCCACAATAAAAAATGCAGATGTGATTGCTGTTGTCAAGAATGGGGTTATAGTGGAGAAAGGAAGGCATGAAACGCTCATTAATGTCAAGGATGGGTTTTATGCTTCCTTGGTTCAACTCCATACAAGTGCTTCAACTGTATAA 3843 0.4244 MSVEEDGVNNKHDETTNPAETSTNGEKEGKSKQKEKQETVPFHRLFSFADSTDILLMCIGTIGAVGNGMGLPLMTLLFGQMIDSFGSNQRNPDVVEQVSKVSLKFVYLAIGCGVAAFLQVSCWMVTGERQAARIRGLYLKTILRQDVAFFDKETNTGEVIGRMSGDTVLIQDAMGEKVGKFLQLIATFIGGFIIAFIKGWLLTVVMLSTLPLLVVSGAAMAVIIGRMASRGQTAYAKAGHVVEQTIGSIRTVASFTGEKQAVTDYSKFLVDAYKSGVHEGSTAGIGLGTVMFVIFGGYALAVWFGAKMIMEKGYNGGTVINVIIAVLTSSMSLGQASPSLSAFAAGQAAAYKMFETIKRKPEIDASDPSGKILEDIRGEVELRDVYFSYPARPEELIFNEFSLHISSGTTAALVGQSGSGKSTVISLIERFYDPHAGAVLIDGINLKEFQLRWIRGKTGLVSQEPVLFASSIKENIAYGKDGATVEEIRHASELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDSESERVVQEALDRIMGNRTTIIVAHRLSTVRNADMIAVIHRGKMVEKGTHSELLKDPEGAYSQLIRLQEVNKVSEETADHHNKNELSVESFRQSSQRRSLQKSISRGSSLGNSSHHSFSVSFGLPTVVNASDPEQENLQPKEKAPEVPLRRLASLNKPEILVLFLGCLAAVGNGVIFPIFGVLISSVIKTFYEPFDEMKKDSKFWAIMFMILGIASLLVIPARSYFFSVAGCKLIQRIRLICFEKVVNMEVSWFDEPENSSGAVGARLSADAASVRALVGDALGLLVQNIATLLAGLIIAFVASWELAFIILVLIPLIGVNGYVQMKFMKGFSADAKMMYEEASQVANDAVGSIRTVASFCAEDKVMELYRKKCEGPMKTGIRQGVISGSGFGVSFFLLFCVYATSFYAGARLVDAEKATFSDVFRVFFALTMAAIGISQSSSFAPDSSKAKSATASIFGMIDKKSEIDPSDESGTTLDNVKGEIELRHVSFKYPSRPDIQILRDLNLAIHSGKTVALVGESGSGKSTVIALLQRFYNPDSGEITLDGIEIRELQLKWLRQQMGLVSQEPVLFNNTIRANIAYGKGGNATEAEITSASELANAHRFISGLQQGYDTIVGERGTQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDKVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGRHETLINVKDGFYASLVQLHTSASTV* 1281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1288 1280 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 59 345 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja5g1288 1280 MobiDBLite consensus disorder prediction 1 37 - -
Lja5g1288 1280 SUPERFAMILY ABC transporter transmembrane region 38 364 IPR036640 GO:0005524|GO:0016021
Lja5g1288 1280 ProSitePatterns ABC transporters family signature. 519 533 IPR017871 GO:0005524
Lja5g1288 1280 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 380 616 IPR003439 GO:0005524
Lja5g1288 1280 CDD ABC_MTABC3_MDL1_MDL2 1035 1273 - -
Lja5g1288 1280 Pfam ABC transporter 1053 1203 IPR003439 GO:0005524
Lja5g1288 1280 SMART AAA_5 407 593 IPR003593 -
Lja5g1288 1280 SMART AAA_5 1062 1255 IPR003593 -
Lja5g1288 1280 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 370 618 IPR027417 -
Lja5g1288 1280 ProSitePatterns ABC transporters family signature. 1175 1189 IPR017871 GO:0005524
Lja5g1288 1280 Gene3D ABC transporter type 1, transmembrane domain 103 1009 IPR036640 GO:0005524|GO:0016021
Lja5g1288 1280 Pfam ABC transporter 399 547 IPR003439 GO:0005524
Lja5g1288 1280 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 714 1000 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja5g1288 1280 SUPERFAMILY ABC transporter transmembrane region 695 1020 IPR036640 GO:0005524|GO:0016021
Lja5g1288 1280 CDD ABC_6TM_Pgp_ABCB1_D2_like 703 1018 - -
Lja5g1288 1280 MobiDBLite consensus disorder prediction 623 644 - -
Lja5g1288 1280 CDD ABC_6TM_Pgp_ABCB1_D1_like 57 341 - -
Lja5g1288 1280 Pfam ABC transporter transmembrane region 713 985 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja5g1288 1280 Pfam ABC transporter transmembrane region 57 331 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja5g1288 1280 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1035 1272 IPR003439 GO:0005524
Lja5g1288 1280 PANTHER - 19 1276 - -
Lja5g1288 1280 Gene3D - 378 635 IPR027417 -
Lja5g1288 1280 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1025 1273 IPR027417 -
Lja5g1288 1280 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 19 1276 - -
Lja5g1288 1280 MobiDBLite consensus disorder prediction 623 637 - -
Lja5g1288 1280 CDD ABC_MTABC3_MDL1_MDL2 380 618 - -
Lja5g1288 1280 Gene3D - 1025 1279 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1288 Lja-Chr5 12969773 12976800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1288 33 1274 Calmodulin-binding Proteins AT2G36910 45.607 0.0 1068
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1288 K05658 - gmx:100800034 2158.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0473 1 4230757 4244174 Lja5g1288 5 12969773 12976800 PCT