Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1279 ATGAAAGGAAAGAAAGTAGCTTTTACAGGTTTGGCTGTTTTACTGGTGGTTGGTTGCGCCATTGGTGCCACCGTCTACACCACAAACAAGCCTCATGCCGCCGCTGCCGGTGCCGGTGGATCTGAAGTGAGCAACCACAACAAGGCAGTGACGGCACTCTGCGACGGTGCTGATGACAAGAAACTCTGCCATGATGTCCTCACCCCTATCAACACCTCAGACCCTAAAGAATACGTGGCCGCGGTGGTCAAAACCTCCATGGACAGCGTCATCAAGGCCTTCAACATGAGCGACAGGCTCACCGTTGAGCATGAAAACAGCAACCCCGGAGTCAAAATGGCGCTCGAGGATTGCAAGGATTTGCTACAATCCGCAATCCAAGAGCTCCAAGCCTCCGGGGTTCTGGTGCAGGAGAGCAGCCTCCTTGATGTTAACCAGCGCTCCGCCGAGCTTAAAAACTGGCTCAGCGCAGTCGTTGCTTACCAGCAATCTTGCCTGGACGGGTTCGACACCAAGGGCGAGAAAGAGGTCCAGGACAAGCTTCAACAAGGAAGCTTGGACGATGTTGGTAAACTTACTGGCTTGGCACTTGACATTGTTTCCGGAATCTCCAAGGTCCTCGGAGCTTTTGATTTCAACCTGCACCTGAAACCCGCTCGTCGCCTTCTTGAGATTGATGCTGAAGGGTACCCTACATGGCTCTCTTTTGCTGATCGTAAACTCGTGGAGTCCAAGTCAAATGTTCTGCCCAACGCAATTGTGGCTAAGGATGGTAGTGGCCAGTTTAAGACCATTACTGAAGCCATTAACTCATACCCTAAGAAGCACCAAGGTAGATTCCTCATCTATGTCAAGGCTGGTGTCTATGACGAGTACATCAACGTTGACAAGAAGAAGCCCAACATTCTCTTGTACGGTGACGGCCCTACCAAGACCATCATCACCGGAAACAAGAACTACGCCGCCGGTGTCAAGACCATGAGAACTGCCACATTCACCACCCTTGCTCCAAACTTCATTGCCAAGTCAATTGCATTTGAGAACACCGCCGGGCCACAGGGACACCAAGCAGTTGCACTCCGTGTGAATGGTGACTGCTCAGCCTTCTTCGACGTCGCGATCCGCGGCTACCAAGACTCGCTGTATGCACACGCTCACCGTCAGTTCTACCGCAACTGCGAGATCTCCGGTACCATCGACTTCATCTTCGGCTACGCCACCACCTTGATCCAAAACTCCAAGATCTTGGTCAGGAAGCCCATGTCAAACCAGCAGAACATCGTCGTCGCCGACGGTACCGCCCAGAAGAACATGCCCACCGGAGTCGTCCTCCAGAACTGCCAGATTCAAGCAGCACCTGAGCTCGCCGCCGACAGGCTCACCGTGAAGACCTACCTCGCTAGGCCATGGAAGGCATTCTCCAGAGCCGTGTTCATTGAAAACACCATCGGTGATTTGATTCAACCAGAAGGTTACATTCCATGGAACCCGATCGAACCTAACACCGAGAACGCTTACTTTGCTGAGTTTGGAAACTCTGGACCCGGTTCAGTGACTCAAGCGAGGGCAAAATTTGGAAAAGGTTTGATTTCCAAGGCTGATGCTGAGAAGTTCACCGCTGAGCAATGGATCCAAGCTAGCACATGGGTCCCAGCTACTGGCATTCCTGTCGACCCTACCTTCACCAAAGCTTAA 1695 0.5233 MKGKKVAFTGLAVLLVVGCAIGATVYTTNKPHAAAAGAGGSEVSNHNKAVTALCDGADDKKLCHDVLTPINTSDPKEYVAAVVKTSMDSVIKAFNMSDRLTVEHENSNPGVKMALEDCKDLLQSAIQELQASGVLVQESSLLDVNQRSAELKNWLSAVVAYQQSCLDGFDTKGEKEVQDKLQQGSLDDVGKLTGLALDIVSGISKVLGAFDFNLHLKPARRLLEIDAEGYPTWLSFADRKLVESKSNVLPNAIVAKDGSGQFKTITEAINSYPKKHQGRFLIYVKAGVYDEYINVDKKKPNILLYGDGPTKTIITGNKNYAAGVKTMRTATFTTLAPNFIAKSIAFENTAGPQGHQAVALRVNGDCSAFFDVAIRGYQDSLYAHAHRQFYRNCEISGTIDFIFGYATTLIQNSKILVRKPMSNQQNIVVADGTAQKNMPTGVVLQNCQIQAAPELAADRLTVKTYLARPWKAFSRAVFIENTIGDLIQPEGYIPWNPIEPNTENAYFAEFGNSGPGSVTQARAKFGKGLISKADAEKFTAEQWIQASTWVPATGIPVDPTFTKA* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1279 564 ProSitePatterns Pectinesterase signature 2. 395 404 IPR033131 -
Lja5g1279 564 Pfam Pectinesterase 251 546 IPR000070 GO:0030599|GO:0042545
Lja5g1279 564 CDD PMEI-like_3 52 205 - -
Lja5g1279 564 Gene3D Invertase/pectin methylesterase inhibitor family protein 44 204 IPR035513 -
Lja5g1279 564 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Lja5g1279 564 PANTHER PECTINESTERASE 7 561 - -
Lja5g1279 564 SUPERFAMILY Pectin lyase-like 251 558 IPR011050 -
Lja5g1279 564 TIGRFAM PME_inhib: pectinesterase inhibitor domain 43 182 IPR006501 GO:0004857
Lja5g1279 564 PANTHER PECTINESTERASE 7 561 - -
Lja5g1279 564 Gene3D - 248 562 IPR012334 -
Lja5g1279 564 SMART PMEI_2 45 199 IPR006501 GO:0004857
Lja5g1279 564 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 47 201 IPR035513 -
Lja5g1279 564 Pfam Plant invertase/pectin methylesterase inhibitor 49 199 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1279 Lja-Chr5 12868550 12870520 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1279 11 556 Carbohydrate Esterase AT3G05610 38.587 3.54e-128 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1279 K01051 - gmx:100808559 849.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1279 5 12868550 12870520 Lja1g0469 1 4167949 4169902 PCT