Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1278 ATGAATACAAAAATAATTGCCTCTGGTGTATCCCTCATCCTGGTGGTGGGTGTTGCCATTGGCGTTGTGGTAGTTGTTAACAAAAAAGACACAACTGATCCTGTGGTAGCAGCACAACAAAAATCCGTGAAGTCAATGTGTGAGGGAACCGAAGACCCTAAGCTCTGTCACGACACTCTCAGCACCGTGAAACCCACCAACTCCTCTGACCCGAACGCTTATATAGCGGCAGTGGTGGAAGCAACCGCCAAGAGCGTCATCCAAGCCATGAACATGAGCGACAGGCTCACGGTGGATCATGGCGGCAAGGACCCCGGCATGAAAATGGCCCTTGACGACTGCAAGGACTTGATGCAGTTCGCCATAGATAGTCTCGAGTCCGCGACTAATCTAGTCCGTGACAACAACATACAAGCTGTTCATGAACAGACCCCTGACTTCAGGAACTGGTTGAGCGCTGTCATGTCATACCAACAATCTTGCATGGAAGGGTTTGAAGATGGGAAAAGTGGTGAGGAAGCGGTTAAGGGACAATTGCAAGAGGGTAGTTTGGACCAGATGGGGAAGCTCACTGGGATAGCCCTTGACATTGTCTCGGACTTGTCCAGGATTCTTCAGACCTTTGACTTGAAGCTGGACCTAAACCCTGCTTCTCGTCGCCTTCTAGAGGCTGAGGAGGTTGACCATGAAGGGCTCCCCTCATGGTTTTCTGGTGCTGATCGGAAGCTGTTAGGGAAGATGAAGAAGGGAGGTAAGGTGACACCGAATGCCGTGGTTGCTAAAGATGGAAGTGGTAAATTTAAAACCATTGCGAGTGCTATTGCCTCGTACCCGAAGGGGTTCAAAGGAAGATACATTATCTATGTCAGGGCTGGGGTTTATGATGAGTACATCACCGTCCCCAAACAAGCTGTGAATTTGCTCTTGTATGGAGATGGCCCTACAAGGACCATTGTCACTGGTCACAAGAACTTTGTAGATGGTGTGAAGACAATGCAAACTGCCACCTTTGCCAATACTGCTGTAGGATTCATCGCCAAATCAATGGCATTTGAGAACACAGCCGGTCCCGCCAAACACCAAGCAGTTGCCTTCCGGAACCAGGGAGACATGTCAGCTTTCTTTGACTGCGCCATGCGCGGCTTCCAAGACACCTTGTACGTCCAAGCGAATCGTCAATTCTACCGCAACTGTGAAATCTCTGGCACGGTGGACTTCATCTTTGGCGCCTCGGCGACCCTCATCCAGAATTCTAGAATCATCGTGCGGAAGCCAGGACCCGGCCAGTTCAACACTGTGACCGCAGACGGCACAAAACAAAGAAACATGGCCACAGGGATCGTGATCCAGAATTGTGAGATAGTTCCGGAAAGGGCCTTGTTCCCTCAAAGGTTTCAGTTCAAGTCGTATCTTGGAAGGCCATGGAAGGCTTATGCTAAAACAGTGGTCATGGAGTCGAATTTGGGTGATTTTATTCAGCCAGTAGGGTGGAGTGTTTGGGAAGGGAATCAGTTTCTCGATACATTGTATTATGCTGAACATGCTAACGTGGGACCTGGCGCTAACCTTAAAAGAAGGGTTAGGTGGAAGGGTTACCATCCCAATATTAATAAGAATGAGGCTGCACAATTCACTGCTGGCCAGTTCCTCAGAGCTGGACCTGCTGGAAGAGCTGAGGATTGGTTGAAGGCTACTGGCGTTCCTTTCACCAACAAAACAGTTGCCTCCGCCGTTTCTCTCATTCTCGTTGTGGGTGTTGTCGTCGGCGTGGTTGCACTTGTCCGCACTAACAATGACAATAGCGCGGCCCCTGAAACCGGCAACAACAATGACATAAACACACATAGCAAATCTGTGCAGGCCGTGTGCCAAAACGCCGAAGACAAGAAGCTATGCACTGATACTCTCAAACCAGTGAGCGACTCAGACGATCCAAAGGAGTACATCGCAACGGTGGTGAAAACCTCCATGGACAGCCATGGAAACAGCAATAGCAGCATCAAGATGGCCCTGGAGGATTGCAAGGACTTGTTACAGTTTGCCATTGAGGAGTTACAAGCGTCCAAGGTCCTAGTCAAGGACAATAATATGAACAATGTGAACGAGCGTGCAGCTGACCTGAAAAACTGGTTGGGTGCGGTACTTGCATACCAGGAATCATGCCTTGACGGGTTCAACACAGACGCTGAGAAGAAGATCCAGTCTCAGCTGCAAACGGGGAGCTTGGATGACGTGGGGAAGTTGACGGCATTGGCGCTTGATATTGTTTCTGGGATCTCAAAAGTGTTGTCTGCCATGAACTTGACTTTGGAAGTAAAACCTTCGTCTCGCCGCCTTCTTGAGGTGGATCAGGATGGGTTACCATCTTGGATATCGGGTGCGGATCGAAAGCTCTTGGCAGAGATGAAAAATGGAGGTTCGGTTCCGCCAAATGCGGTGGTTGCCAAGGATGGAAGTGGCCAGTATAAGAGTATTCTTGATGCTATTAACGCCTACCCTAAAAAGCATAAGGGTAGGTACGTGATCTATGTTAAGGCCGGTGTCTATGATGAGTACATTCAGATTGACAAGAAAAAACCTAATATTTTGATGTACGGGGATGGCCCTAAGAAGACTGTTATCACTGGTAATAAAAATTTCGTAGATGGATACAAGACTATGAGATCTGCCACGTTCACGACTGTTGCTCCAGATTTCATGGCCAAGTCAATGGGATTTGAGAACACAGCCGGCGCCAGCAAGCACCAAGCAGTAGCGCTTCGCGTGCAAGGAGACCGCTCGGCTTTCTTCGACTGTGCTATAAGCGGCTATCAAGACACCTTATATGCCCACGCCCACCGCCAGTTCTACCGAAACTGCGAAATCTCCGGCACGGTGGACTTCATCTTCGGCTACTCAACACTCCTAATCCAAAGCTCCAAGCTCATAGTGAGAAAACCCGGTAAGAATCAGCAAAACATAGTAGTGGCCGACGGAACAGCCCAGAAGAACATGCCCACAGGAGCAGTGATCCAGAACTGCCAGATCGTGCCGGAGCCAAGCCTTGCCGCGGATAAGTCCGTGAGGACGTACCTGGCTCGGCCGTGGAAGGCCTATTCAAGGGCGATCTTCATGGAGAATAACATTGGTGACTTGATCCAGCCAGATGGGTTTCTTCCTTGGCAAGGAACCCAGTTTCTTGACACGTGCTTTTTTGCGGAGTTTGGGAACACTGGATCAGGTGCCAATGTTCAGAAGAGAGTCAAGTGGGGAAAAGGTGTTCTTAGCAAAGGTGATGCTATTAAATACACTGCTGATCAGTGGCTCCAAGCAGGCGAGTGGTTACCGGCTACCGGCATACCCTATGATCCTGGCTTCACTAAAGCATGA 3369 0.4954 MNTKIIASGVSLILVVGVAIGVVVVVNKKDTTDPVVAAQQKSVKSMCEGTEDPKLCHDTLSTVKPTNSSDPNAYIAAVVEATAKSVIQAMNMSDRLTVDHGGKDPGMKMALDDCKDLMQFAIDSLESATNLVRDNNIQAVHEQTPDFRNWLSAVMSYQQSCMEGFEDGKSGEEAVKGQLQEGSLDQMGKLTGIALDIVSDLSRILQTFDLKLDLNPASRRLLEAEEVDHEGLPSWFSGADRKLLGKMKKGGKVTPNAVVAKDGSGKFKTIASAIASYPKGFKGRYIIYVRAGVYDEYITVPKQAVNLLLYGDGPTRTIVTGHKNFVDGVKTMQTATFANTAVGFIAKSMAFENTAGPAKHQAVAFRNQGDMSAFFDCAMRGFQDTLYVQANRQFYRNCEISGTVDFIFGASATLIQNSRIIVRKPGPGQFNTVTADGTKQRNMATGIVIQNCEIVPERALFPQRFQFKSYLGRPWKAYAKTVVMESNLGDFIQPVGWSVWEGNQFLDTLYYAEHANVGPGANLKRRVRWKGYHPNINKNEAAQFTAGQFLRAGPAGRAEDWLKATGVPFTNKTVASAVSLILVVGVVVGVVALVRTNNDNSAAPETGNNNDINTHSKSVQAVCQNAEDKKLCTDTLKPVSDSDDPKEYIATVVKTSMDSHGNSNSSIKMALEDCKDLLQFAIEELQASKVLVKDNNMNNVNERAADLKNWLGAVLAYQESCLDGFNTDAEKKIQSQLQTGSLDDVGKLTALALDIVSGISKVLSAMNLTLEVKPSSRRLLEVDQDGLPSWISGADRKLLAEMKNGGSVPPNAVVAKDGSGQYKSILDAINAYPKKHKGRYVIYVKAGVYDEYIQIDKKKPNILMYGDGPKKTVITGNKNFVDGYKTMRSATFTTVAPDFMAKSMGFENTAGASKHQAVALRVQGDRSAFFDCAISGYQDTLYAHAHRQFYRNCEISGTVDFIFGYSTLLIQSSKLIVRKPGKNQQNIVVADGTAQKNMPTGAVIQNCQIVPEPSLAADKSVRTYLARPWKAYSRAIFMENNIGDLIQPDGFLPWQGTQFLDTCFFAEFGNTGSGANVQKRVKWGKGVLSKGDAIKYTADQWLQAGEWLPATGIPYDPGFTKA* 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1278 1122 PANTHER PECTINESTERASE 3 570 - -
Lja5g1278 1122 PANTHER PECTINESTERASE 572 1118 - -
Lja5g1278 1122 ProSitePatterns Pectinesterase signature 2. 955 964 IPR033131 -
Lja5g1278 1122 Gene3D Invertase/pectin methylesterase inhibitor family protein 613 760 IPR035513 -
Lja5g1278 1122 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 203 IPR035513 -
Lja5g1278 1122 PANTHER PECTINESTERASE 3 570 - -
Lja5g1278 1122 PANTHER PECTINESTERASE 572 1118 - -
Lja5g1278 1122 TIGRFAM PME_inhib: pectinesterase inhibitor domain 612 737 IPR006501 GO:0004857
Lja5g1278 1122 TIGRFAM PME_inhib: pectinesterase inhibitor domain 19 176 IPR006501 GO:0004857
Lja5g1278 1122 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 617 757 IPR035513 -
Lja5g1278 1122 ProSitePatterns Pectinesterase signature 2. 400 409 IPR033131 -
Lja5g1278 1122 SUPERFAMILY Pectin lyase-like 255 570 IPR011050 -
Lja5g1278 1122 Gene3D - 250 573 IPR012334 -
Lja5g1278 1122 Gene3D - 806 1119 IPR012334 -
Lja5g1278 1122 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 201 IPR035513 -
Lja5g1278 1122 SUPERFAMILY Pectin lyase-like 809 1117 IPR011050 -
Lja5g1278 1122 Pfam Plant invertase/pectin methylesterase inhibitor 42 197 IPR006501 GO:0004857
Lja5g1278 1122 Pfam Plant invertase/pectin methylesterase inhibitor 618 755 IPR006501 GO:0004857
Lja5g1278 1122 Pfam Pectinesterase 811 1103 IPR000070 GO:0030599|GO:0042545
Lja5g1278 1122 Pfam Pectinesterase 256 551 IPR000070 GO:0030599|GO:0042545
Lja5g1278 1122 SMART PMEI_2 614 755 IPR006501 GO:0004857
Lja5g1278 1122 SMART PMEI_2 38 197 IPR006501 GO:0004857
Lja5g1278 1122 CDD PMEI-like_3 45 203 - -
Lja5g1278 1122 CDD PMEI-like_3 621 761 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1278 Lja-Chr5 12855817 12862873 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1278 5 604 Carbohydrate Esterase AT3G05610 38.386 8.21e-128 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1278 K01051 - gmx:100789650 872.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0469 1 4167949 4169902 Lja5g1278 5 12855817 12862873 PCT