Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1277 ATGAGCTGTTTCAATTGTTGCGAAGAGGATGATTTCCACAAGACTGCTGAAAGCGGAGGACCGTATGTTGTAAAAAATCCGTCAGGGAATGATGGAAATCATCATGCTTCTGAAACTGCAAAGCAGGGTGGTCAGACTGTTAAACCCCAACCCATTGAAGTTCCTAATATATCAGAAGATGAGCTAAAAGAAGTTACAGATAACTTTGGGCAAGATTCTCTTATTGGTGAGGGATCCTATGGAAGAGTCTATTATGGTGTACTTAAAAATGGTCAGGCTGCAGCAATCAAGAAGTTAGATGCTAGTAAACAGCCTGATGAGGAATTCTTAGCTCAGGTTTCAATGGTATCAAGGCTGAAGCATGAAAATTTTGTTCAGTTGCTTGGATATTCAGTTGATGGAAATTCCCGTATTCTTGTTTATGAGTTTGCATCTAATGGGTCTCTTCATGATATTTTACATGGCAGAAAAGGTGTTAAAGGAGCACAGCCTGGTCCTGTTTTGACATGGGCACAGAGAGTGAAAATTGCCGTCGGGGCTGCAAGAGGGCTTGAATACTTGCATGAGAAGGCTGATCCCCACATTATCCACCGGGACATCAAGTCAAGCAATGTGCTAATCTTTGATGATGATGTTGCTAAAATTGCAGATTTTGATTTATCGAATCAGGCTCCGGACATGGCTGCACGTCTTCATTCTACTCGTGTCCTTGGGACCTTTGGTTATCATGCACCAGAATATGCTATGACCGGACAATTGAATGCTAAGAGTGATGTGTACAGTTTTGGTGTTGTCCTTCTGGAACTCTTGACTGGAAGGAAACCAGTTGATCATACCCTACCACGTGGACAGCAGAGTCTTGTTACTTGGGCTACACCGAAACTAAGTGAAGATAAAGTCAGGCAGTGTGTTGATACAAGACTAGGAGGAGAATACCCACCGAAAGCTGTTGCTAAGATGGCTGCTGTTGCTGCACTATGTGTGCAATATGAAGCTGATTTCAGACCCAACATGAGCATTGTAGTCAAAGCTCTTCAACCATTGTTGACTGCACGACCTGGACCTGCTGGTGAAACAGCAAATTAA 1086 0.43 MSCFNCCEEDDFHKTAESGGPYVVKNPSGNDGNHHASETAKQGGQTVKPQPIEVPNISEDELKEVTDNFGQDSLIGEGSYGRVYYGVLKNGQAAAIKKLDASKQPDEEFLAQVSMVSRLKHENFVQLLGYSVDGNSRILVYEFASNGSLHDILHGRKGVKGAQPGPVLTWAQRVKIAVGAARGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDTRLGGEYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLLTARPGPAGETAN* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1277 361 Gene3D Phosphorylase Kinase; domain 1 30 143 - -
Lja5g1277 361 MobiDBLite consensus disorder prediction 17 53 - -
Lja5g1277 361 SUPERFAMILY Protein kinase-like (PK-like) 48 345 IPR011009 -
Lja5g1277 361 SMART serkin_6 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1277 361 CDD STKc_IRAK 75 348 - -
Lja5g1277 361 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Lja5g1277 361 ProSiteProfiles Protein kinase domain profile. 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1277 361 Pfam Protein tyrosine and serine/threonine kinase 73 345 IPR001245 GO:0004672|GO:0006468
Lja5g1277 361 MobiDBLite consensus disorder prediction 30 52 - -
Lja5g1277 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Lja5g1277 361 Gene3D Transferase(Phosphotransferase) domain 1 144 353 - -
Lja5g1277 361 PIRSF ILK 12 352 - -
Lja5g1277 361 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 359 - -
Lja5g1277 361 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1277 Lja-Chr5 12849451 12855163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1277 49 346 Receptor kinase-like Gene Family AT4G02010 50.993 4.64e-94 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Lja5g1277 PK_Tyr_Ser-Thr 7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1277 K13436 - gmx:100808383 677.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1277 5 12849451 12855163 Lja5g1277 5 12849451 12855163 ECH
Lja1g0465 1 4147062 4152655 Lja5g1277 5 12849451 12855163 PCT