Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1274 ATGGAAGCTAGATTCGGTGCAGAAGCTTATCATTATTATGGTGTGGGTGCCTCTTCTGATATGAGGGGTATGGGGAAGAGGTCTGCTGAGTGGGATTTGAATAATTGGAGGTGGGATGGGGATCTGTTCATTGCTAGTAGGGTGAATCCAGTGCAGGAGGATGGGGTTGGTCAACAACTTTTCCCTCTTGTGTCCGGGATCCCAGCGTCGAATAGCTCTTCTTCGTGTTCTGAGGAGGTAGATCTTAGGGATCCCATGGGGAGTAGGGAAGGGGAGAGGAAAAGGAGAGTTATTGTGCTGGAGGATGATGGTTTGAATGAGGAAGGAGGTACGCTTAGCTTGAAGCTTGGTGGGCATGCTGCGGATAGGGAGGTTGCAAGCTGGGATGGGGGGAATGGGAAGAAGAGCAGAGTGGCTGGTGGGGGTGCTTCGAATCGCGCTGTTTGTCAGGTGGAGGACTGTTGTGCAGATCTGAGCAGGGCTAAGGATTATCACAGGCGTCATAAAGTTTGTGAGATGCACTCCAAGGCCACTAGGGCACTTGTCGGAAATGCAATGCAAAGGTTCTGTCAACAATGCAGCAGGTTTCACATGCTTCAAGAATTTGATGAAGGAAAGAGAAGCTGTCGAAGACGCTTGGCAGGCCATAATAAACGAAGAAGGAAAACAAATAATGAAGCTGTTCCTAATGGAAATCCTCTAAATGATGATCAAACTAGTAGTTATCTGTTGATAAGTTTGTTGAAGATACTTTCAAATATGAATTCTGACAGATCGGATCAGACTACAGACCAGGATCTACTGACTCATCTTCTAAGGAGTCTTGCTAGTCGGAATGGTGAACAAGGGGGCAATAACTTGTCTAACATTTTGCGAGAACCAGAGAATTTGTTGAGAGAAGGGGGTTCATCTAGGGAGTCAGAGATGGTGCCAACTTTACTCTCCAATGGTTCTCAAGGCTCTCCAACTGATATAAGACAACATCAAACTGTATCTATGAATAAAATGCAACAAGAAGTGGTGCATGCACATGATGCTAGGGCTACTGATCAGCAGCTCATGTCTTATATAAAGCCCAGCATTTCAAACACTCCTCCAGCTTACGCAGAAGCCAGAGACAGTACCGCTGGACAAATCAAGATGAATAATTTTGATTTGAATGACATATATATTGACTCAGACGATGGCATAGAAGATCTAGAAAGATTGCCTGGAACTACTAATCATGTCACTAGCTCTCTTGATTACCCATGGACACAACAAGATTCCCATCAGTCAAGTCCACCTCAGACAAGTAGAAATTCAGAGTCTGGATCTGCCCACTCCCCTTCTAGTTCCACTGGAGAAGCTCAGTGTCGCACAGATCGTATTGTTATCAAACTCTTTGGTAAAGAGCCGAGTGATTTTCCTCTTATACTTAGAGCACAGATTCTTGACTGGTTATCACACAGTCCTACTGATATTGAAAGCTACATACGACCTGGTTGTATTGTTTTGACAATTTATCTGCGCCAGGCTGAAGCTGTTTGGGAGGAAATTTGCTATGATCTGACTTCTAGTTTGGGTAGGCTACTGGATGTCTCAGATGATACTTTTTGGAGAACTGGATGGGTTCACATCAGGGTGCAGCATCAGATGGCATTCATTTTCAATGGTCAAGTTGTCATCGATACATCACTACCTTTCAGAAGTAACAATTATAGCAAGATTTTGACTGTTAGTCCTATAGCTGCACCAGCATCAAAGAGAGTTCAATTTTCCGTTAAGGGTGTCAACATGATACGCCCTGCCACGAGGTTAATGTGTGCTTTAGAAGGGAAATATCTGGTCTGTGAAGATGCTCATGAGTCGATGGATCAATACTCCGAGGAGCTTGATGGACTTCATTGCATCCAGTTTTCTTGTGCTGTCCCTGTAACAAATGGAAGAGGATTTATTGAGATTGAGGACCAGGGTTTGAGTAGCAGCTTTTTTCCTTTCATTGTTGCGGAGGAGGATGTTTGCTCAGATATCTGTGGGCTTGAGCCTCTACTAGAATTAAGTGAAACTGATCCAGATATTGAAGGGACTGGAAAGATTAAAGCCAAAAGTCAAGCTATGGATTTCATTCATGAAATAGGTTGGCTCCTTCATGGAAGCCAGTTGAAATCTAGGATGGTTCACTTAAGCTCCAGCACAGATCTCTTTCCATTGAAACGGTTCAAGTGGCTCATGGAGTTCTCTATGGATCATGATTGGTGTGCAGTAGTGAAAAAACTGCTGAACCTACTGCTTGAGGGAACTGTCAGTACAGGAGATCACCCATCCCTGGATCTAGCACTTTCAGAGATGGGTCTCCTTCACAGAGCTGTAAGGAGAAATAGCAAGCAGTTAGTGGAGCTGCTTTTGACATACGTTCCTGAAAATATCTCTAATGAAGTAAGACCTGAAGGCAAAGCACTGGTTGAGGGAGAGAAACAGAGCTTTTTGTTTAGACCTGATGCTGCCGGTCCTGCTGGTTTAACACCCCTTCATATAGCAGCTGGGAAAGATGGTTCTGAGGATGTACTGGACGCTTTAACTAATGATCCTTGCATGGTGGGAATTGAGGCATGGAAAAATGCTCGTGACAGCACAGGCTCCACACCTGAGGATTATGCGCGTTTACGTGGCCACTATACTTACATTCACTTAGTGCAGAAAAAGATTAACAAGAGACAAGGAGCACCTCATGTGGTGGTTGAGATTCCCACAAATCTGACAGAAAACGACACAAACCAGAAGCAAAATGAGTCGTCCACTACCTTTGAGATTGCGAAAACCCGTGACCAAGGGCACTGTAAACTTTGTGACATTAAATTATCTTGTAGAACTGCAGTTGGCAGGTCTTTGGTATACAAACCTGCAATGCTCTCCATGGTGGCAGTAGCAGCAGTCTGTGTCTGTGTGGCCCTTCTGTTTAAAAGTTCACCTGAAGTTCTTTACATGTTCCGACCCTTCAGTTGGGAATCGTTGGATTTCGGAACAAGCTAA 3012 0.4442 MEARFGAEAYHYYGVGASSDMRGMGKRSAEWDLNNWRWDGDLFIASRVNPVQEDGVGQQLFPLVSGIPASNSSSSCSEEVDLRDPMGSREGERKRRVIVLEDDGLNEEGGTLSLKLGGHAADREVASWDGGNGKKSRVAGGGASNRAVCQVEDCCADLSRAKDYHRRHKVCEMHSKATRALVGNAMQRFCQQCSRFHMLQEFDEGKRSCRRRLAGHNKRRRKTNNEAVPNGNPLNDDQTSSYLLISLLKILSNMNSDRSDQTTDQDLLTHLLRSLASRNGEQGGNNLSNILREPENLLREGGSSRESEMVPTLLSNGSQGSPTDIRQHQTVSMNKMQQEVVHAHDARATDQQLMSYIKPSISNTPPAYAEARDSTAGQIKMNNFDLNDIYIDSDDGIEDLERLPGTTNHVTSSLDYPWTQQDSHQSSPPQTSRNSESGSAHSPSSSTGEAQCRTDRIVIKLFGKEPSDFPLILRAQILDWLSHSPTDIESYIRPGCIVLTIYLRQAEAVWEEICYDLTSSLGRLLDVSDDTFWRTGWVHIRVQHQMAFIFNGQVVIDTSLPFRSNNYSKILTVSPIAAPASKRVQFSVKGVNMIRPATRLMCALEGKYLVCEDAHESMDQYSEELDGLHCIQFSCAVPVTNGRGFIEIEDQGLSSSFFPFIVAEEDVCSDICGLEPLLELSETDPDIEGTGKIKAKSQAMDFIHEIGWLLHGSQLKSRMVHLSSSTDLFPLKRFKWLMEFSMDHDWCAVVKKLLNLLLEGTVSTGDHPSLDLALSEMGLLHRAVRRNSKQLVELLLTYVPENISNEVRPEGKALVEGEKQSFLFRPDAAGPAGLTPLHIAAGKDGSEDVLDALTNDPCMVGIEAWKNARDSTGSTPEDYARLRGHYTYIHLVQKKINKRQGAPHVVVEIPTNLTENDTNQKQNESSTTFEIAKTRDQGHCKLCDIKLSCRTAVGRSLVYKPAMLSMVAVAAVCVCVALLFKSSPEVLYMFRPFSWESLDFGTS* 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1274 1003 MobiDBLite consensus disorder prediction 402 450 - -
Lja5g1274 1003 MobiDBLite consensus disorder prediction 405 450 - -
Lja5g1274 1003 MobiDBLite consensus disorder prediction 213 236 - -
Lja5g1274 1003 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 17 1002 - -
Lja5g1274 1003 SUPERFAMILY SBT domain 147 227 IPR036893 GO:0003677|GO:0005634
Lja5g1274 1003 MobiDBLite consensus disorder prediction 69 89 - -
Lja5g1274 1003 SUPERFAMILY Ankyrin repeat 776 892 IPR036770 -
Lja5g1274 1003 Gene3D - 747 909 IPR036770 -
Lja5g1274 1003 ProSiteProfiles Zinc finger SBP-type profile. 146 223 IPR004333 GO:0003677
Lja5g1274 1003 Pfam SBP domain 149 222 IPR004333 GO:0003677
Lja5g1274 1003 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 1002 IPR044817 GO:0003677
Lja5g1274 1003 Gene3D - 140 210 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1274 Lja-Chr5 12787520 12795426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1274 1 1003 SBP-box Gene Family AT3G60030 53.484 0.0 963
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lja5g1274 SBP 1.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1274 - - gmx:100809806 1687.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1274 5 12787520 12795426 Lja5g1274 5 12787520 12795426 ECH