Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1268 ATGGTGGCTGAAGCAGAAATCGTGTGTCAACAGAACATGGGTGTGTTGGATGTGAAGTTTTTTCCGAATAAAGGGAGCAATATTCACGAGATCGGTGATGCAGATGCCATCATCTCACCTCCGAGTTTTGACCGAGTTCGTCCTTCTGAACCAGTCTCCGCTGAGTTACTCACTTCACAAGATGATGCTAAGACTGCAGATGCAATCTCTGATGCTGCACTTGAATCTGCGGTTCTGCAATTTGTTCCCTGTATCCGTTCTGGTAGTTTTGCTGACATTGGGCCACGGAGATACATGGAAGATGAACATGTAAGGATAGATGATTTGTCTTCACATCTGGGATCACTGTACAACTTTCCCAACCCTAGTGCCTTTTATGGGGTGTTTGATGGTCATGGAGGACCTGAAGCAGCAGCTTATATCAGAAAAAATGTTATTAAGTTCTTCTTTGAGGATGTCAGTTTTCCTCAGACTTCTGAAGTTGACAAGGTGTTTTTACAAGAGGTAGAAAATTCCCTCAGAAAGGCATTTCTTTTGGCTGACTCAGCTTTGGCTGATGATTGCAGTGTGAATACTTCATCAGGAACCACAGCCCTTACTGCTTTCATATTTGGAAGGCTCTTGATGGTGGCCAATGCTGGTGACTGCCGAGCAGTTCTCAGCCGCAAAGGAGAGGCCATTGACATGTCTGAAGATCACAGGCCTATTTATCCATCAGAGCGGAGGCGAGTTGAAGATTTGGGAGGCTACATAGAAGATGGATATCTCAATGGGGTTCTATCAGTTACTAGAGCACTAGGAGACTGGGACATGAAGCTACCAAAGGGTGCCCCCTCACCTTTGATTGCAGAACCCGAGTTCCGGCAAATGGTTCTAACAGAAGATGATGAATTCCTCATCATAGGATGCGACGGCATCTGGGATGTGATGTCAAGCCAGCATGCTGTTAGCCTTGTTCGCAAAGGCCTGAGGAGGCATGATGACCCAGAGAGGTGCGCGAGGGACCTGGTTATGGAGGCACTGCGACTGAACACATTTGACAACCTCACAGTGATAATTGTTTGCTTCTCTTCCCTTGACCACAGGGAATCAGAGCCATCCCCACCTCAACGGAAATTGAGATGCTGTAGTCTCTCTGCAGAGGCTCTTTGTAGCTTGAGAAGCTTGTTGGAAGGAGGTGCTAGCAACTGA 1191 0.4694 MVAEAEIVCQQNMGVLDVKFFPNKGSNIHEIGDADAIISPPSFDRVRPSEPVSAELLTSQDDAKTADAISDAALESAVLQFVPCIRSGSFADIGPRRYMEDEHVRIDDLSSHLGSLYNFPNPSAFYGVFDGHGGPEAAAYIRKNVIKFFFEDVSFPQTSEVDKVFLQEVENSLRKAFLLADSALADDCSVNTSSGTTALTAFIFGRLLMVANAGDCRAVLSRKGEAIDMSEDHRPIYPSERRRVEDLGGYIEDGYLNGVLSVTRALGDWDMKLPKGAPSPLIAEPEFRQMVLTEDDEFLIIGCDGIWDVMSSQHAVSLVRKGLRRHDDPERCARDLVMEALRLNTFDNLTVIIVCFSSLDHRESEPSPPQRKLRCCSLSAEALCSLRSLLEGGASN* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1268 396 Pfam Protein phosphatase 2C 96 348 IPR001932 -
Lja5g1268 396 SUPERFAMILY PP2C-like 80 358 IPR036457 -
Lja5g1268 396 Gene3D - 72 363 IPR036457 -
Lja5g1268 396 PANTHER PROTEIN PHOSPHATASE 2C 1 378 IPR015655 GO:0004722|GO:0006470
Lja5g1268 396 SMART PP2C_4 76 354 IPR001932 -
Lja5g1268 396 ProSitePatterns PPM-type phosphatase domain signature. 125 133 IPR000222 GO:0043169
Lja5g1268 396 CDD PP2Cc 85 356 IPR001932 -
Lja5g1268 396 ProSiteProfiles PPM-type phosphatase domain profile. 86 356 IPR001932 -
Lja5g1268 396 PANTHER PROTEIN PHOSPHATASE 2C 49-RELATED 1 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1268 Lja-Chr5 12737110 12740190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1268 99 392 PP2C-type Phosphatase Gene Family AT3G62260 71.186 7.02e-155 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1268 K14803 - gmx:100819791 715.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1268 5 12737110 12740190 Lja5g1268 5 12737110 12740190 ECH