Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1266 ATGGCAACAGCGGGTGTAGCGCCTGCTCCTGGATTAAGAGATGCTAATGCAAGTTCAGGTGGTGTTGATAAGTTGCCTGATGAGTTGAATGGCATGAAAATTAGGGATGACAGGGAAATGGAAGAAACTGTCATAGATGGAAATGGGGCTGAAACAGGACATGTAATTGTCACCACTATTGGCGGTAAAAATGGACAGCCAAAGCAGACTATAAGCTACATGGCTGAGCGTATTGTTGGACATGGATCATTTGGTGTAGTTTTCCAGGCAAAGTGCTTGGAAACTGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAGACAAGAGGTACAAGAACCGGGAATTGCAAACCATGCGCCTCATGGATCATCCCAATGTTGTAACTTTGAAGCATTGTTTCTTTTCAACAACTGAAAAAGATGAGCTTTATCTTAACTTGGTACTTGAGTATGTTCCTGAGACTGTTCATCGAGTGATCAGACACTACAACAAAATGAATCAAAGAATGCCCTTAATATATGTAAAGCTTTATTCTTACCAGATATGTAGAGCTCTAGCTTATATTCACAACTGTATTGGAGTCACTCACAGGGATATAAAACCTCAAAATTTACTGGTCAATCCTCACACCCACCAGCTGAAGATTTGTGACTTTGGGAGTGCCAAAGTATTGGTCAAGGGCGAACCGAACATATCTTACATCTGTTCTAGGTACTATAGAGCACCTGAGCTTATATTTGGAGCAACTGAGTACACCACAGCCATTGACATCTGGTCAGCTGGTTGTGTACTTGGAGAACTTTTGCTTGGACAGCCTCTCTTTCCCGGCGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAGGTTTTAGGTACCCCAACTAGGGAAGAAATAAAGTGTATGAATCCGAATTACACTGAGTTCAAATTCCCACAAATCAAAGCTCACCCATGGCACAAGATCTTTCACAAGCGTATGCCACCTGAAGCTGTGGATCTCGTGTCAAGACTACTACAATACTCTCCAAATCTTCGATGCACAGCTCTGGAGGCCCTGGTCCATCCATTCTTTGATGAACTTCGTGATCCAAATACCCACTTACCAAATGGACGCTTCCTCCCTCCACTTTTTAACTTCAAAGCCAACGAGCTTAGGGGAGTACCTGCTGAAATGCTGGTGAAGCTGATTCCATCTCATGCAAGAAAGCAATGTGCGTTGTTTGGTTCGTAG 1230 0.4301 MATAGVAPAPGLRDANASSGGVDKLPDELNGMKIRDDREMEETVIDGNGAETGHVIVTTIGGKNGQPKQTISYMAERIVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLMDHPNVVTLKHCFFSTTEKDELYLNLVLEYVPETVHRVIRHYNKMNQRMPLIYVKLYSYQICRALAYIHNCIGVTHRDIKPQNLLVNPHTHQLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLGELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCTALEALVHPFFDELRDPNTHLPNGRFLPPLFNFKANELRGVPAEMLVKLIPSHARKQCALFGS* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1266 409 SUPERFAMILY Protein kinase-like (PK-like) 72 382 IPR011009 -
Lja5g1266 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Lja5g1266 409 ProSiteProfiles Protein kinase domain profile. 73 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1266 409 ProSitePatterns Protein kinases ATP-binding region signature. 79 103 IPR017441 GO:0005524
Lja5g1266 409 CDD STKc_GSK3 68 360 IPR039192 -
Lja5g1266 409 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 407 - -
Lja5g1266 409 Gene3D Transferase(Phosphotransferase) domain 1 153 401 - -
Lja5g1266 409 PANTHER SHAGGY-RELATED PROTEIN KINASE ALPHA 1 407 - -
Lja5g1266 409 Gene3D Phosphorylase Kinase; domain 1 57 152 - -
Lja5g1266 409 SMART serkin_6 73 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1266 409 Pfam Protein kinase domain 73 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1266 409 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1266 Lja-Chr5 12707330 12711270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1266 79 365 Core Cell Cycle Gene Families AT1G76540 34.237 1.96e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Lja5g1266 Pkinase 4.3e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1266 K00924 - gmx:100788046 797.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1266 5 12707330 12711270 Lja5g1266 5 12707330 12711270 ECH
Lja1g0458 1 4057473 4061490 Lja5g1266 5 12707330 12711270 ECH