Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1262 ATGAGAAACTCCTCCTCAGCCAGATCTCCTCACCAAGCTCAAGATCACATAGTTGCTGAGAGAAAGAGGAGAGAAAAGATTAGCCAGCAGTTCATAGCTCTTTCAGCTCTTATTCCAGGCCTAAAAAAGATAGATAAGGCCTCTGTTCTGGGGGACACTATACAACACATTAAACAGCTCCAAGAGCAGGTGAAGCTACTGGAAGAGCAAAGCAAAAGGATAAACGCAGAATCAGTGGTATATGTTGATAAATCTAAGTCCGAAGATGTCTCAGACACATCCTCAAATAATGTCTCACTGCCTGAAATTGAGGCAAGGGTGTTAGAGAACAAAGTTTTGATCCGAATCCACTGTGAGAAACAGGAGGGGGTGCTGATGAATATACTCAGAGAGATAGATAACCTTGATCTAACAGTGATCAATAGCAGTACCTTGCATTTCGGGGCCTCCAAACTGGACATAACCATCATAGCCGAGATGGATGATGAGTTCAAGCTGAGCGTGAAGGAACTGGCTAGAAAGCTTCGAGTGGGGCTCTTGCAATTAATGTAG 552 0.4384 MRNSSSARSPHQAQDHIVAERKRREKISQQFIALSALIPGLKKIDKASVLGDTIQHIKQLQEQVKLLEEQSKRINAESVVYVDKSKSEDVSDTSSNNVSLPEIEARVLENKVLIRIHCEKQEGVLMNILREIDNLDLTVINSSTLHFGASKLDITIIAEMDDEFKLSVKELARKLRVGLLQLM* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1262 183 SMART finulus 17 66 IPR011598 GO:0046983
Lja5g1262 183 PANTHER TRANSCRIPTION FACTOR NAI1 3 182 - -
Lja5g1262 183 MobiDBLite consensus disorder prediction 1 20 - -
Lja5g1262 183 Pfam Helix-loop-helix DNA-binding domain 14 61 IPR011598 GO:0046983
Lja5g1262 183 Coils Coil 50 77 - -
Lja5g1262 183 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 77 IPR036638 GO:0046983
Lja5g1262 183 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 60 IPR011598 GO:0046983
Lja5g1262 183 Gene3D - 9 81 IPR036638 GO:0046983
Lja5g1262 183 PANTHER BHLH TRANSCRIPTION FACTOR 3 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1262 Lja-Chr5 12680443 12681670 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1262 2 179 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 49.733 2.50e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja5g1262 HLH 3.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1262 - - lja:Lj0g3v0069559.1 339.347