Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1256 ATGGAGACAGCGTACACTCACGTGATGAGAAGTTTATCAGATTGTGGCTCATCAGCAACATGTGGAAGTGAAGAGCAAGCTGCAATAAGGAAAGGTTCATGGACAGAGGACGAGGATTTTCTTCTTACCAACTTCGTCTCCATCCATGGCGAAGGTCATTGGAACTCCGTCGCTCGCTGCTCAGGTCTAAAGCGAACAGGCAAAAGTTGCAGACTAAGATGGTTGAACTACTTGCGTCCAAATGTTAGACGTGGGAACATCACCCTCCAAGAACAGCTCTTGATTCTCGAACTCCATTCGCGCTGGGGCAATCGGTGGTCTAAAATAGCAGAACAATTGCCTGGGAGAACAGACAATGAGATAAAGAACTATTGGAGGACCAGGGTTGTGAAGCTGGCTAGGCAACTCAAATGTGATGTTAACAGCAAACAGTTCAGGGACGCGTTGCGTTTCGTGTGGATGCCGCGCCTCATGGAAAGGATCAATGCCTCTACTGGTGGTTCTTCCAATGATCAAACCACCTTCTGCAGCAACACTCAAGCACACAGTGACTCTTGTGTGATGGCTAACCCCCAAATGTTGTTGGAGGTTTCATCTTACTCATCAGGGGTTGAAAATGTCCAACCTCCTTCACTGTCAGAATCAAGCGTGTCTTACAATTTAATGGGTGGTGCTGGTAGTAATAATTGGTCACCAGATAGTGCAGAAATGGGGCAATTCAATTACTCTGACAACATGCAAGCATTTGAACCAGGCAATGGTTTTGGTGGTGTAGATAATTTGTGGACGGATGAAAACATTTGGTTCTTGCAGCAGCAGCTTGCTGATGATATTTGA 837 0.4612 METAYTHVMRSLSDCGSSATCGSEEQAAIRKGSWTEDEDFLLTNFVSIHGEGHWNSVARCSGLKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILELHSRWGNRWSKIAEQLPGRTDNEIKNYWRTRVVKLARQLKCDVNSKQFRDALRFVWMPRLMERINASTGGSSNDQTTFCSNTQAHSDSCVMANPQMLLEVSSYSSGVENVQPPSLSESSVSYNLMGGAGSNNWSPDSAEMGQFNYSDNMQAFEPGNGFGGVDNLWTDENIWFLQQQLADDI* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1256 278 Gene3D - 88 129 - -
Lja5g1256 278 CDD SANT 104 127 IPR001005 -
Lja5g1256 278 ProSiteProfiles Myb-like domain profile. 79 129 IPR001005 -
Lja5g1256 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 78 IPR017930 -
Lja5g1256 278 SMART sant 30 80 IPR001005 -
Lja5g1256 278 SMART sant 83 131 IPR001005 -
Lja5g1256 278 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 16 272 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lja5g1256 278 Pfam Myb-like DNA-binding domain 31 78 IPR001005 -
Lja5g1256 278 Pfam Myb-like DNA-binding domain 84 127 IPR001005 -
Lja5g1256 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 133 IPR017930 -
Lja5g1256 278 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 16 272 - -
Lja5g1256 278 SUPERFAMILY Homeodomain-like 29 125 IPR009057 -
Lja5g1256 278 Gene3D - 23 84 - -
Lja5g1256 278 ProSiteProfiles Myb-like domain profile. 26 78 IPR001005 -
Lja5g1256 278 CDD SANT 33 78 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1256 Lja-Chr5 12614843 12616250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1256 24 277 MYB Transcription Factor Family AT2G47190 49.635 5.05e-81 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja5g1256 Myb_DNA-binding 7.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1256 K09422 - gmx:778040 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1256 5 12614843 12616250 Lja5g1256 5 12614843 12616250 ECH