Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1255 ATGATTCTGAAAATCCATTTCCATGTCATTTTATTTCTTCTTTCATCGTTATACATCACTACTACCAGCTCAGACGATTTTGACAAGTGGATATCTTGGAACGTCAAGAGTTATCATCAGAAAAAGACCGTTTTGGGAACCAAATGGAACTTGGCTGCACCAGATTTGAAACTGAGGCAGGCTGAGAGTGACAAAGTTAGAATTACAGTTAGCCAAGATGGTGCTGGTGATTTCAAAACCATTACAGAAGCTATTAATAGCATTCCGCCGCGAAACACTAGGAGAGTCATAGTGATGATTGCCCCCGGTGTTTATAGGGAGAAAGTGATGATCCCAAGAACATTGCCATTCATTACATTCTTAGGGGATGCTTTGGATCCACCAACCATTACTGGAAATGATACAGCTTCTGTCACTGGAAGCAATGGAGCTCCATTAGGGACATTCCGGAGTGCAACTGTTGCTGTGGATGCTAGTTATTTTATTGCCATCAACATCAAATTTGAGAACACTGCTGGGCATGTCATTGGATCAGTGGGGGGACAAGCAGTGGCGCTTCGCATCTCAGGAACCAAAGCTGCATTTTACAATTGCAGCTTCTATGGGGCTCAAGACACACTTTATGATCACAAAGGTCTTCACTACTTCAACAATTGCTCTATTCAAGGCTCTGTTGATTTCATCTTCGGCTCTGGGAAGTCCCTTTATGAGAACTGCTATCTGAGTTCCATAACCAAGAAAGTGGCTTCCATCACTGCACAAAAGCGTACAAATTCATCATTGGAAAGCGGCTTTTCGTTCAAAAACAGTGTTATAACAGGCAGTGGACAGGTGTATCTTGGAAGAGCATGGGGAGATTATTCAAGAGTTGTTTTTTCTTACACCTACATGGACAAGATAGTCCACCCAAGAGGATGGAGTGATTGGGGTGACCAAAAGAGGGACCAGAGGGTATATTATGGAGAGTACAAGTGCAGTGGGCCGGGAGCTAACTTGAGCGGAAGAGTGCCATGGGCTAGAGTGCTTACAGATGAAGAGGCCAAACCTTTTATTGGGATGAACTTCATTGAAGGAGACACTTGGCTCATTAACCCCTAA 1098 0.4353 MILKIHFHVILFLLSSLYITTTSSDDFDKWISWNVKSYHQKKTVLGTKWNLAAPDLKLRQAESDKVRITVSQDGAGDFKTITEAINSIPPRNTRRVIVMIAPGVYREKVMIPRTLPFITFLGDALDPPTITGNDTASVTGSNGAPLGTFRSATVAVDASYFIAINIKFENTAGHVIGSVGGQAVALRISGTKAAFYNCSFYGAQDTLYDHKGLHYFNNCSIQGSVDFIFGSGKSLYENCYLSSITKKVASITAQKRTNSSLESGFSFKNSVITGSGQVYLGRAWGDYSRVVFSYTYMDKIVHPRGWSDWGDQKRDQRVYYGEYKCSGPGANLSGRVPWARVLTDEEAKPFIGMNFIEGDTWLINP* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1255 365 PANTHER PECTINESTERASE 20 363 - -
Lja5g1255 365 Pfam Pectinesterase 68 359 IPR000070 GO:0030599|GO:0042545
Lja5g1255 365 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 20 363 - -
Lja5g1255 365 SUPERFAMILY Pectin lyase-like 67 362 IPR011050 -
Lja5g1255 365 ProSitePatterns Pectinesterase signature 2. 221 230 IPR033131 -
Lja5g1255 365 Gene3D - 62 364 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1255 Lja-Chr5 12602964 12610060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1255 1 362 Carbohydrate Esterase AT5G47500 42.740 1.26e-97 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1255 K01051 - cit:102614801 546.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1255 5 12602964 12610060 Lja5g1255 5 12602964 12610060 ECH
Lja1g0785 1 7594354 7599680 Lja5g1255 5 12602964 12610060 PCT