Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1251 ATGTCCATGGATGCGAAGGAAATCCTGGGATTGCCCAATAGTTCCTTCCTTCAAGCTCAGGAGGAGAAGAACTCTCAACCTCAGAGAAAACCAGATGGCATGTCGAGGGAGGTTTATGCGCTTACTGGTGGTTTGACACCTCTTATGCCTACCATTGATCCCTCTCAATTGAAGAAAAGGCCACCCTCAGATGAAAAGGTCAGTTGGCAATGGCTTCCGTTCACGAATTCTGCCCGTAAAGATGATCTTCACCTTTACCATTGGGTTCGAGTTGCAAATGGTGCTCCACCAGCAGGGGAATATTCTTTTGCCAAGTATAACAAGTCTGTTGACATTACAAGATACACTGATGAGGAGTATGAAAAGCATTTGGCAGATCCTAAATGGACCAAGGAGGAGACAGATCAGCTATTTGAGTTGTGTGAGAGATTCAATCTCCGATTTATTGTAATAGCTGATAGGTTCCCGTCATCTAGAACTGTAGAAGAATTAAAGGAGCGATATTATAGTGTATCTCGAGCTATATTAATTGCTAGGAATCCATCTTCTGGGGACGTTGCAGTGGATCCTCTCGTTAAGGAACCATATAATGTTTCACAAGAGTTGGAGCGGAAACAAGCTTTGTCTCTGGTCCTCTCTCAGACAAGGCGGCAAGAACAAAGAGATGACGAGGTGCTTGCTGAAGCAAAAAGAATATCCGAGTTGCGGATGGCAGATAAGGTCGCCAAAGAATCTGAGTTGGTTACTGCTTCAAATGCTGGTGCAGACACTACAGAGAGGGGTACTACCGGTGAAACTGCATCTCCACCAAATATCCAACCTCCACCAACTGGTGTGCCTTCCACAGTAACAATAGATAATGCATCTACACTAGCTTCTCTTCGCATTCTTCGCGTGTATCTGAGAACCTATGCACTTGAGCAAATGGTGCAATCTGCTAGCTCATCAGCTGGACTTCGGACTATCAAACGAGTTGAGCAAACTTTGCAGGAACTTGGGGTCAATTTGAAACCAAGGGTTCCCACGAAAGGTGTTTGTGCAGAGCATCTTGAACTAAGAAAAGAAATACTAACACTGCTGAATCTTCAGAAACAGCTGCAATATAAGGAGGCTGAGGGTTCGTCTTTTCGTGATGGGTCATACAATGAAACACCAGGAACACCAAAGCGTTTGCCTCGTGCTGGGGATCAGGATCGGACATTTGTTCCTGACAGTACAAGTTTTGGAGGGGAAAGGATTGGCAAAAGGGATCAAAAGCGCAAGGCGCCTGGACGGCTTTCAGAAGCTCCATCACCAGTCCAATCTAAAAGACCTAGAAAACAGAAGGCCTCAGATCTTTAG 1341 0.4526 MSMDAKEILGLPNSSFLQAQEEKNSQPQRKPDGMSREVYALTGGLTPLMPTIDPSQLKKRPPSDEKVSWQWLPFTNSARKDDLHLYHWVRVANGAPPAGEYSFAKYNKSVDITRYTDEEYEKHLADPKWTKEETDQLFELCERFNLRFIVIADRFPSSRTVEELKERYYSVSRAILIARNPSSGDVAVDPLVKEPYNVSQELERKQALSLVLSQTRRQEQRDDEVLAEAKRISELRMADKVAKESELVTASNAGADTTERGTTGETASPPNIQPPPTGVPSTVTIDNASTLASLRILRVYLRTYALEQMVQSASSSAGLRTIKRVEQTLQELGVNLKPRVPTKGVCAEHLELRKEILTLLNLQKQLQYKEAEGSSFRDGSYNETPGTPKRLPRAGDQDRTFVPDSTSFGGERIGKRDQKRKAPGRLSEAPSPVQSKRPRKQKASDL* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1251 446 Pfam DNA methyltransferase 1-associated protein 1 (DMAP1) 247 378 IPR008468 GO:0005634|GO:0045892
Lja5g1251 446 CDD SANT_DMAP1_like 129 171 - -
Lja5g1251 446 MobiDBLite consensus disorder prediction 1 38 - -
Lja5g1251 446 MobiDBLite consensus disorder prediction 410 424 - -
Lja5g1251 446 Pfam SANT/Myb-like domain of DAMP1 101 175 IPR032563 -
Lja5g1251 446 PANTHER DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER 3 446 IPR027109 GO:0006281|GO:0006338|GO:0035267|GO:0043967|GO:0043968
Lja5g1251 446 MobiDBLite consensus disorder prediction 250 268 - -
Lja5g1251 446 SUPERFAMILY Homeodomain-like 125 175 IPR009057 -
Lja5g1251 446 MobiDBLite consensus disorder prediction 246 281 - -
Lja5g1251 446 Gene3D - 98 184 - -
Lja5g1251 446 SMART sant 125 174 IPR001005 -
Lja5g1251 446 PANTHER BNAA04G26950D PROTEIN 3 446 - -
Lja5g1251 446 MobiDBLite consensus disorder prediction 371 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1251 Lja-Chr5 12571969 12579456 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja5g1251 DMAP1 5.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1251 K11324 - pvy:116132595 675.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1251 5 12571969 12579456 Lja5g1251 5 12571969 12579456 ECH