Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1244 ATGGAGAAGAAATCTAGTACTAGTACTGTGAAGACTGAGGATGTGGTTGGTTCATCTTCCTTCCCTTGTTACAATTCTAGTGCCTTTCCATTTTCCAATGGATTTGATTTTTCTGAGGTGGAGAAAAGCTCTTTAGGGTTTATGGAGTTACTGGGTCAGGGTGTGCAGGACTATGGTTCTCTGCTTGATTTACCACAACTCTCAACTATGCCTAGTACTGTGTCTGTGCCTCATCATCAGACTGCTACAGTGAAGGCTCCATCTGATGATGCTGGGAAAGAGTGTTCTTCTGAGGTGTTGAATCAGCAACCTGCTACTCCTAACTCTTCTTCGATTTCATCGACATCAAGTGAGGCAGTCATTAATGATGAACAGAATAAGACTGTTGACCAAACAGAAGATGATGAACACAACAAGACCAAGAAACAGTTGAAGGCAAAGAAGACAAATCAGAAGAGACAGAGAGAACCAAGATTCGCCTTCATGACCAAAAGCGAGGTAGATCATCTCGAAGATGGATATAGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAATAGCCCCTTTCCAAGGAGCTATTATCGTTGCACCAGTGCTTCATGTAATGTGAAGAAACGTGTGGAGCGATCCTTTACTGATCCAAGCATTGTGGTCACAACCTATGAAGGCCAACACACACATTCAAGCCCGGTCATGCCTCGGGCAGGCTTCGGCGGAGCTCCGATACGGCCAGGTTACTCCACCGCGTGTGGCGCCACTAACTTCGGCTCAGTTTTGCAAGGAAACTACTTGTCCCAGTATCAGCACCATCCCCACCAGCACCTTGTCAATACGCTGTCATCTCTGCAGGGTTTCCCTTACTCTGATTCTCCATCTTCAAAAAACGCTGCTTTTGTTACTCAAGAGATGCAGCATGCGACTGCATTTCTAATGGACCATGGGCTTCTTCAAGATGTTGTTCCTTCACACATGTTGAAAGAAGAGTAG 987 0.4529 MEKKSSTSTVKTEDVVGSSSFPCYNSSAFPFSNGFDFSEVEKSSLGFMELLGQGVQDYGSLLDLPQLSTMPSTVSVPHHQTATVKAPSDDAGKECSSEVLNQQPATPNSSSISSTSSEAVINDEQNKTVDQTEDDEHNKTKKQLKAKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSASCNVKKRVERSFTDPSIVVTTYEGQHTHSSPVMPRAGFGGAPIRPGYSTACGATNFGSVLQGNYLSQYQHHPHQHLVNTLSSLQGFPYSDSPSSKNAAFVTQEMQHATAFLMDHGLLQDVVPSHMLKEE* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1244 328 PANTHER WRKY TRANSCRIPTION FACTOR 1 320 - -
Lja5g1244 328 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 320 IPR044810 GO:0003700
Lja5g1244 328 PIRSF WRKY_txn_fact_IIc 1 328 IPR017396 GO:0003700
Lja5g1244 328 SUPERFAMILY WRKY DNA-binding domain 162 230 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja5g1244 328 MobiDBLite consensus disorder prediction 71 155 - -
Lja5g1244 328 ProSiteProfiles WRKY domain profile. 165 230 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja5g1244 328 Pfam WRKY DNA -binding domain 171 227 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja5g1244 328 MobiDBLite consensus disorder prediction 95 126 - -
Lja5g1244 328 MobiDBLite consensus disorder prediction 127 142 - -
Lja5g1244 328 SMART WRKY_cls 170 229 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja5g1244 328 Gene3D WRKY domain 155 231 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1244 Lja-Chr5 12463253 12465402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1244 36 328 WRKY Transcription Factor Family AT2G47260 49.371 1.75e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja5g1244 WRKY 1.7e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1244 - - aprc:113872234 427.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1244 5 12463253 12465402 Lja5g1244 5 12463253 12465402 ECH