Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1238 ATGTCGCTTCCTATCTCCTTAATCGGTGGGTTGAGAAATTCTCAATATCAATGCATGATGCTGAGAATTTTGCTTGTTTTGTTATCTTGCATGGGGTTTATGGTTGATTGTGGTGCATATGATGCAACACTGGAAGCTCCTGCGTTATCTCCAGCTGTTGATCTGCCACTACCACCGAGTGTTGATGGGGGGAAGCATTTGTCTCCAGTTTCTGGGTTTAAGAGTATTGCCCCTATGCGTTCCATTTCTGATGCAATTCCTTCTGCTCTTGGTCGCCCACCATTGTCCCCTTTTGTTTCCAATTGTTGTGCACGAAACATGGTATTGAAACGAGGAAGTGAGAATTGCCATTGTGTTTATCCCATAAAGCTAGACATTCTTCTGTTGAATGTCTCTACAAACCCCAACTGGAATGTTTTTCTGGATGAATTGGCTAGCCAACTTGGGCTGCGGACTACCCAAATTGAATTGGTCAACTTTTATATGCTCAGCAGATCGATGTTGAATTTGTCGATGGATATCACTCCACGTAAAGAAATCAGTTTTTCTGCAGAGCAAGCATCTAAAATAAACTCTACACTTTTACTGCATAAGGTTAAACTTGACCCTAGATTTGTGGGTGACTACAGAGTTCTCAATATAACCTGGTTTCAACCTCCACCTCCTTCTCAAGCTCCTAGTTTTTCTGCTTCACCTTTAAAATCTCCTCAGAGACAAGCACCAAAAACTACATCTAGGAGTCCATCAGATGGGGGGAGGCATCCGAATTTGCTTCTTGTTCTTGGAATTGTAATGGGCATACTTTTCATTTCAATTGTATGTGTACTTGCACTTTGTTTACGCATGTTGCGGCCAAAAACAAAAGCACCTCCTATAGAAACCGAAAAGCCAAGGATGGAAAGTGCAGTTTCAGCTGCTGGGTCTCTTCCCCACCCAAGCAGTACACGCTTTATTGCTTACGATGAACTTAAAGACGCAACAAACAATTTTGAAACGTCGAGTTTACTTGGAGAAGGAGGTTTTGGTAGAGTTTTTAAAGGTGTCTTAAATGACGGAACTGCTGTTGCAATTAAGAGGCTTACCAGTGGAGGGCAACAGGGTGGCAAAGAATTTTTGGTTGAAGTTGAGATGCTTAGTCGGTTGCATCATCGTAACCTTGTAAAACTAGTGGGATACTACAGCAACCGTGACGAGTCACAAAATCTACTTTGCTATGAGCTTGTCCCAAATGGAAGTTTGGAGTCCTGGCTTCATGGTCCCTTGGGAATAAACTGCCCTTTGGATTGGGACACCAGAATGAAAATCGCACTTGATGCTGCAAGGGGACTTGCATACTTGCATGAAGATTCACAGCCCTGTGTTATACACAGAGATTTCAAGGCATCCAACATATTGCTTGAGAACAACTTTAATGCTAAAGTTGCAGATTTTGGTCTTGCTAAACAGGCACCTGAAGGCAGAGCTAATTATTTGTCCACTCGTGTTATGGGAACATTTGGGTATGTAGCTCCTGAGTATGCTATGACTGGACACCTACTTGTTAAAAGTGATGTTTATAGCTATGGGGTTGTCCTGCTGGAACTATTGACTGGAAGGAAACCTGTGGATATGTCACAGCCATCTGGACAAGAGAACCTTGTTACTTGGGCAAGGCCAATTCTTAGAGACAAGGACCGGTTGGAAGAACTCGCTGATCCAAGGCTAGGAGGAAGATACCCGAAGGAAGATTTTGTCCGCGTTTGCACTATTGCCGCAGCCTGTGTTGCTCCTGAAGCAAGCCAACGACCTACCATGGGGGAAGTGGTACAGTCACTGAAAATGGTGCAGCGCATCACAGAATACCAAGATCCCATGTTAGCCTCATCCAACACACGGCCTAATATGAGGCAATCGTCTACCACTTATGAGTCTGATGGGACATCTTCAATGTTTTCTTCGGGTCCTTACTCTGGTCTAAGTGCCTTTGAATATGACAACCTTTCAAGGACAGCTGTTTTCTCTGAAGATCTTCATGAAGGACGATGA 2025 0.4365 MSLPISLIGGLRNSQYQCMMLRILLVLLSCMGFMVDCGAYDATLEAPALSPAVDLPLPPSVDGGKHLSPVSGFKSIAPMRSISDAIPSALGRPPLSPFVSNCCARNMVLKRGSENCHCVYPIKLDILLLNVSTNPNWNVFLDELASQLGLRTTQIELVNFYMLSRSMLNLSMDITPRKEISFSAEQASKINSTLLLHKVKLDPRFVGDYRVLNITWFQPPPPSQAPSFSASPLKSPQRQAPKTTSRSPSDGGRHPNLLLVLGIVMGILFISIVCVLALCLRMLRPKTKAPPIETEKPRMESAVSAAGSLPHPSSTRFIAYDELKDATNNFETSSLLGEGGFGRVFKGVLNDGTAVAIKRLTSGGQQGGKEFLVEVEMLSRLHHRNLVKLVGYYSNRDESQNLLCYELVPNGSLESWLHGPLGINCPLDWDTRMKIALDAARGLAYLHEDSQPCVIHRDFKASNILLENNFNAKVADFGLAKQAPEGRANYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPSGQENLVTWARPILRDKDRLEELADPRLGGRYPKEDFVRVCTIAAACVAPEASQRPTMGEVVQSLKMVQRITEYQDPMLASSNTRPNMRQSSTTYESDGTSSMFSSGPYSGLSAFEYDNLSRTAVFSEDLHEGR* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1238 674 ProSitePatterns Protein kinases ATP-binding region signature. 336 358 IPR017441 GO:0005524
Lja5g1238 674 ProSitePatterns Serine/Threonine protein kinases active-site signature. 454 466 IPR008271 GO:0004672|GO:0006468
Lja5g1238 674 MobiDBLite consensus disorder prediction 619 642 - -
Lja5g1238 674 Gene3D Transferase(Phosphotransferase) domain 1 408 629 - -
Lja5g1238 674 ProSiteProfiles Protein kinase domain profile. 330 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1238 674 MobiDBLite consensus disorder prediction 223 251 - -
Lja5g1238 674 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ALE2 59 674 - -
Lja5g1238 674 CDD STKc_IRAK 336 606 - -
Lja5g1238 674 Pfam Protein kinase domain 330 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1238 674 SUPERFAMILY Protein kinase-like (PK-like) 308 607 IPR011009 -
Lja5g1238 674 Gene3D Phosphorylase Kinase; domain 1 304 407 - -
Lja5g1238 674 MobiDBLite consensus disorder prediction 228 251 - -
Lja5g1238 674 PANTHER OS01G0750732 PROTEIN 59 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1238 Lja-Chr5 12413538 12419160 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1238 68 674 Receptor kinase-like Gene Family AT4G02010 73.770 0.0 939
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Lja5g1238 Pkinase 2.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1238 - - lja:Lj5g3v1598350.1 1102.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1238 5 12413538 12419160 Lja5g1238 5 12413538 12419160 ECH
Lja1g0431 1 3801583 3806543 Lja5g1238 5 12413538 12419160 PCT