Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1234 ATGTTTCAAGATTTCTACTTTGAACCTGCTCTGGAACCAAAAGCTGCATTTCAAGAACCTAAGGAGCAAAAGAATCGAGGAGTGGAAAGTTCACAGTTTTTTGGATTCAATAAGCACCTTGTTGGGTCCAATAAGCAGGTTCCACCATCATCTTTGGCATCACTGGATCTCTTGAAAAATTATGGAAGCAGCAAAACCAAAACTTGTGCAAGTCCTCTGAAGTTGTCAACTGAAGACATATTAAGAGTAGCTGGAGCAAGGTTTATCCAACACTCAAGTTCAACACAATGGCAAGACAATCTCTGCACTCCAATGCACCCATATGCAAATGGTTTCAGTGGTTTCTCTGAGGAAGAAATCAAAGACATTGAACTTGCTCAGCTTCTTCTTGCAGCAGCAGAGAGGGTAAGTTGCCAACAATTTGAACGTGCAAGCTTCTTACTTCAAAATTTTCAGGGGAATTCACCACATCATGGAAGTGCAGTTCAGAGAGTTATCTTTCACTTCGCTCAAGCACTCCAAGAAAGAATCAACAAAGAAAATGGGACAACACTGAAGGGAAGTGATGAGAGAGTTAAAGAAAGGCATTTGATTGAGCTATTGGAGGTTGACACCAACATAACCATTTTATGCCATCAAAAAATGCCTTTCTATCAAGTAATGCAATTCGCTGGTGTGCAAGCTATACTGGAAAATGTTGCATCCGGAACCAAAATCCATCTGATAAACATTAACATTGGCTGTGGGGTGATGTGCACAGGTTTGATGCAAGCATTATCAGAGAGGCAGGAAAATCCAGTTGAGATTCTGAAGATCACTGCAGTTGGAGTTGCAAACAAGACCAAGATAGAAGAGACAGGGAAAAGGTTAATGAACATGATGGAGATCAAGGTAGAGCAATTTGATGTTGAAGATGATGAAGCTGTGGCTGTGTACTCTCCTTATTTCCTGAGGTCTCTGGTGTCAGATTCGGATTCCTTGGAGAATTTGATGAAGGTGTTAAGAAAAATCAAGCCAAATATAATGATAAACCTTGGAGTGGAGGCAAATCATAACTCACCATCCTTTGTGAATCGCTTTGTGGAAGCATTGTTCTACTACTCAGCATATTTTGACTGCCTTGATACCTGCATGAAAGAGGAGCATGAGTGCAGAATGAGAATTGAAGAAATGCTATCTGAGAAGATAAGAAATATTGTTGCTATGGAGGATAGAGAGAGGACAGTTAGGAGTGTGAAGATTGATGTTTGGAGAAGGTTCTTTGCAAGGTACAGAATGGTGGAAACTAGATTGAGTGAGTCAGCAGTGTACCAAGCTAACTTGGTTGCTAAAAAGTTTGCTTGTGGGAATTCCTGCACCATAGACAAGAATGGCAAGTGTCTGTTAATTGGATGGAAGGGGACCCCAATTCATTCAATCTCAGCTTGGAAGTTTCCCTGA 1440 0.409 MFQDFYFEPALEPKAAFQEPKEQKNRGVESSQFFGFNKHLVGSNKQVPPSSLASLDLLKNYGSSKTKTCASPLKLSTEDILRVAGARFIQHSSSTQWQDNLCTPMHPYANGFSGFSEEEIKDIELAQLLLAAAERVSCQQFERASFLLQNFQGNSPHHGSAVQRVIFHFAQALQERINKENGTTLKGSDERVKERHLIELLEVDTNITILCHQKMPFYQVMQFAGVQAILENVASGTKIHLININIGCGVMCTGLMQALSERQENPVEILKITAVGVANKTKIEETGKRLMNMMEIKVEQFDVEDDEAVAVYSPYFLRSLVSDSDSLENLMKVLRKIKPNIMINLGVEANHNSPSFVNRFVEALFYYSAYFDCLDTCMKEEHECRMRIEEMLSEKIRNIVAMEDRERTVRSVKIDVWRRFFARYRMVETRLSESAVYQANLVAKKFACGNSCTIDKNGKCLLIGWKGTPIHSISAWKFP* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1234 479 Pfam GRAS domain family 126 477 IPR005202 -
Lja5g1234 479 ProSiteProfiles GRAS family profile. 116 477 IPR005202 -
Lja5g1234 479 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 40 477 IPR005202 -
Lja5g1234 479 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 40 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1234 Lja-Chr5 12393064 12394590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1234 123 478 GRAS Transcription Factor Family AT1G66350 27.733 1.39e-43 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja5g1234 GRAS 2.1e-68 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1234 - - ccaj:109806982 585.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1234 5 12393064 12394590 Lja5g1234 5 12393064 12394590 ECH