Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1233 ATGGTGTCCAAACCTACGGACTCTGCTCTCAAACTTCCTCGAAAACAGCATGAAGAGCCAGAAAATTATGCTGTTGGTGTTGGGAACAACTTGTACACCAAGATAAATCAGCTGAAAAAGCAAATCCAGGAAGAGAGAATTGTATACGTTAAAGAAAAACTTCAAAAGAATGAGAAGATGCTAGAATGTCATATTTCAAGAGTCGTGTCAGCAATATCAACCAGGGACTCTTCACAGACGGAGGAAAATAGGACACATTCACTTCTTTCCTCCAGGATCGGCCATCCTTTATGTAAACTTAATGGTTTCTCTCAGGCTTCAGGGGACAAAGACTATAACAATCAAGATGTATCATCTGCTACAAGCATCAAGATTCCACATATTGAAAGATTACCACCATATACATCTTGGATATTTTTGGACAAAAATCAGAGAATGGCTGAAGATCAGTCAGTTGTTGGAAGAAGACGTATCTACTATGATCAACATGGAAGTGAAGCACTGATATGTAGTGACAGTGAGGAAGAGTTAACAGAACCTGAGGAAGAAAAACATGAATTTTCTGAGGCTGAAGACCGTGCTATATGGATGGCATTTGAGGAACATGGAATAAATGAGGAGGTATTGAATATTGTTAGCAAGTTTGTTGGGGGCACCAGTTTAGAAATTCAGGAGAGGTACAAAAGTATCAAGGAAAATAACAATGGTAGGTTAGGCCGTCATTCAGAAGGCTCAGGAGAATACAAATCTCATATTGGCATATGTCCAGAGAAAAGTTTGAGTGCTGCATTAGATTCTTTCGATAACCTTTTCTGTCGCCGGTGCCTGATTTTTGACTGTCGCCTGCATGGATGTTCTCAACCTTTAATATATCCTAGTGAAATGCAGACAGTTTTGCCTGGGCCTGAAGGTGACAGGAAACCATGCAGTGATCAGTGTTACCTTCAGTTAAAGGTTATCAAAAGTGTGTCGGGAGATTCAACTCGTGAGTCTTTTCAGGATAAAAAAACTACAATTATAGAAGAGGCTGACGGGATATTGGCACCCTCCAGTGCAGGGGAACTTGGTAATCAGGGTGCTACACTTCCGACAGAAATGGCTGGTCATGAAAATCTCAATTTGAATGTTCCTGTCTCAGAAAATTTGGGGAAACGGAAGGTCACAAATCAATCAGATACAGCACTATGTGACTCCTCTATATTACCTCCTGATGATTCTCACAATTCTTGTAAAAAGCTGAAGAGAATCTCCGATGATACAGTCACTGCAATAAGTGATAATAACGAGAACCTTAATTTGGACGCATGTGGTGAAAGTAAACATGGAGTTTCGGGAAAATCTGTAGAACATCCTTCAAATAAATTAATATTTTCTTCTAGCACTTGCCATGGTGAGCATGATGAGAGTGTCAAGGATGGACCAAAAGATGTCACAAATGAGACAGAATTTAATAAGTTGTTCAATTCAATGGGAGGGCAAGTTGATGGGATGCTAAGTCTCTCGGACTGGAAACCTCTGGAGAAAGACTTATACTTGAAGGGAGTAGAAATGTTCGGAAGAAACAGTTGTCTCATAGCAAGGAACTTGCTTTCTGGTTTGAAGACTTGCATGGAAATAGCTAGTTACATGCATGCTGGAGGAGTGTTGATGCCCTACGGGTCTTTTGCTGCATCTAGTTCAATCATGGACGACAAGGGAAAATTTGATGCAGAGTGCCAAGACCAAGACATATCATCTAGGTCACGGACGCTGCTGAGAAAGAGGGGCAAAACAAGAAAGTTTAAATATTCTTGGAAGTCTGCTGGCCATCCATCAATATGGAAAAGGATTGCTGATGGAAAGAACCAATCTTGCCAGCAGTATACACCATGTGGATGTCAGTCAATGTGTGGAAAGGATTGTTCTTGTATGAATGGTGGAACTTGCTGCGAAAAATATTGTGGTTGTTCAAAGAGCTGCAAAAACCGGTTCAGAGGATGCCATTGTGCCAAGAGTCAATGCAGAAGCCGACAATGTCCATGCTTTGCTGCTGGACGTGAATGTGACCCAGATGTCTGTCGAAATTGCTGGGTTAGCTGCGGGGATGGTTCGCTAGGGGAGCCACCTCGGCATGGAGAAGGTCAATGCGGCAATATGAGGCTTCTGTTAAGGCAACAACAGAGGATTCTCTTGGCAAAGTCTGATATTGCTGGATGGGGAGCCTTCTTGAAGAACCCTGTTAACAAAAATGATTACCTAGGAGAGTACACTGGTGAACTGATCTCCCACCGAGAAGCTGATAAACGTGGGAAAATATATGATCGTGCGAATTCATCTTTCCTTTTTGACTTAAATGATCAGGCATGTGTCTCATTGTCTCAGCATGGTCTACTTTTTTCTCTTAACATCGGCTACTCTGGCTTTTCTCAAATTGCTTACGTTCTCGATGCTTATCGCAAAGGAGACAAGTTGAAATTTGCAAACCACTCATCAAACCCCAACTGCTATGCAAAGGTAATGCTGGTTGCTGGAGATCACCGAGTAGGGATATTCGCCAAGGAACACATTGAAGCTAGTGAGGAGCTCTTCTATGATTATCGCTACGGTCCAGATCAAGCGCCCCCATGGGCTCGTAAACCAGAGGGTTCCAAGAGAGATGAATCAGCAGTTCCTCAAGGCAGAGCAAAGAAACACCAGTCTCATTGA 2685 0.4231 MVSKPTDSALKLPRKQHEEPENYAVGVGNNLYTKINQLKKQIQEERIVYVKEKLQKNEKMLECHISRVVSAISTRDSSQTEENRTHSLLSSRIGHPLCKLNGFSQASGDKDYNNQDVSSATSIKIPHIERLPPYTSWIFLDKNQRMAEDQSVVGRRRIYYDQHGSEALICSDSEEELTEPEEEKHEFSEAEDRAIWMAFEEHGINEEVLNIVSKFVGGTSLEIQERYKSIKENNNGRLGRHSEGSGEYKSHIGICPEKSLSAALDSFDNLFCRRCLIFDCRLHGCSQPLIYPSEMQTVLPGPEGDRKPCSDQCYLQLKVIKSVSGDSTRESFQDKKTTIIEEADGILAPSSAGELGNQGATLPTEMAGHENLNLNVPVSENLGKRKVTNQSDTALCDSSILPPDDSHNSCKKLKRISDDTVTAISDNNENLNLDACGESKHGVSGKSVEHPSNKLIFSSSTCHGEHDESVKDGPKDVTNETEFNKLFNSMGGQVDGMLSLSDWKPLEKDLYLKGVEMFGRNSCLIARNLLSGLKTCMEIASYMHAGGVLMPYGSFAASSSIMDDKGKFDAECQDQDISSRSRTLLRKRGKTRKFKYSWKSAGHPSIWKRIADGKNQSCQQYTPCGCQSMCGKDCSCMNGGTCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGSLGEPPRHGEGQCGNMRLLLRQQQRILLAKSDIAGWGAFLKNPVNKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNDQACVSLSQHGLLFSLNIGYSGFSQIAYVLDAYRKGDKLKFANHSSNPNCYAKVMLVAGDHRVGIFAKEHIEASEELFYDYRYGPDQAPPWARKPEGSKRDESAVPQGRAKKHQSH* 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1233 894 SUPERFAMILY SET domain 621 863 IPR046341 -
Lja5g1233 894 ProSiteProfiles SET domain profile. 720 860 IPR001214 GO:0005515
Lja5g1233 894 CDD SET_EZH 720 861 - -
Lja5g1233 894 Pfam CXC domain 659 690 IPR041355 -
Lja5g1233 894 MobiDBLite consensus disorder prediction 1 20 - -
Lja5g1233 894 MobiDBLite consensus disorder prediction 458 477 - -
Lja5g1233 894 SMART CXC_2 655 692 IPR033467 -
Lja5g1233 894 MobiDBLite consensus disorder prediction 871 887 - -
Lja5g1233 894 Gene3D SET domain 621 862 IPR046341 -
Lja5g1233 894 ProSiteProfiles CXC domain profile. 607 706 IPR026489 -
Lja5g1233 894 Pfam SET domain 731 859 IPR001214 GO:0005515
Lja5g1233 894 MobiDBLite consensus disorder prediction 866 894 - -
Lja5g1233 894 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 894 IPR025778 GO:0031519
Lja5g1233 894 Coils Coil 35 55 - -
Lja5g1233 894 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 805 892 IPR045318 GO:0006338|GO:0018024
Lja5g1233 894 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 805 892 - -
Lja5g1233 894 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 29 782 - -
Lja5g1233 894 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 29 782 IPR045318 GO:0006338|GO:0018024
Lja5g1233 894 SMART set_7 720 866 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1233 Lja-Chr5 12382233 12391677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1233 709 863 C2H2 Transcription Factor Family AT2G23740 24.528 5.19e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lja5g1233 SET 1.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1233 - - gmx:100808730 1401.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1233 5 12382233 12391677 Lja5g1233 5 12382233 12391677 ECH
Lja1g0426 1 3742496 3751929 Lja5g1233 5 12382233 12391677 PCT