Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1229 ATGGCTTCGGTTCAACGCGGTTCCAGTTCGGGATCGGAAGGCGGAGATCTGGCTATTGACGACAGGAAGAGGAAGAGGATGGTGTCGAACCGCGAATCGGCTCGGCGGTCGCGGATGAGGAAGCAGAAGCAGCTTGAGGATCTGACGGCTGAGATGAGCAGGTTGCAGGTTTCGAACGAGAGTCTGGCTCAGGGGATAAAGGTGAAGGAGGTTTCGCTGATTGAGATGGAAGCTGCTAATGATATTCTCAGGGCTCAGACTATGGAACTTGCTGATCGGTTGCGGTTTCTGAACTCCATTCTGGAGATTGCTGAAGAGGTCAGTGGATTCTCCGTTGATATTCCTCAGATTCCTGACCCGTTGCTGAAACCATGGCATGTTCCTCATGCGATTCATCCTATCATGGCGTCCTCTGATGACATGTTCCTCTTTTGA 435 0.5172 MASVQRGSSSGSEGGDLAIDDRKRKRMVSNRESARRSRMRKQKQLEDLTAEMSRLQVSNESLAQGIKVKEVSLIEMEAANDILRAQTMELADRLRFLNSILEIAEEVSGFSVDIPQIPDPLLKPWHVPHAIHPIMASSDDMFLF* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1229 144 PANTHER BZIP TRANSCRIPTION FACTOR 53 1 139 - -
Lja5g1229 144 Pfam bZIP transcription factor 22 66 IPR004827 GO:0003700|GO:0006355
Lja5g1229 144 SUPERFAMILY Leucine zipper domain 22 67 IPR046347 GO:0003700|GO:0006355
Lja5g1229 144 Coils Coil 31 65 - -
Lja5g1229 144 Gene3D - 21 101 - -
Lja5g1229 144 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 20 67 IPR004827 GO:0003700|GO:0006355
Lja5g1229 144 MobiDBLite consensus disorder prediction 16 45 - -
Lja5g1229 144 CDD bZIP_plant_GBF1 23 66 IPR045314 GO:0003700|GO:0006355
Lja5g1229 144 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 25 40 IPR004827 GO:0003700|GO:0006355
Lja5g1229 144 SMART brlzneu 18 82 IPR004827 GO:0003700|GO:0006355
Lja5g1229 144 MobiDBLite consensus disorder prediction 1 45 - -
Lja5g1229 144 PANTHER BZIP TRANSCRIPTION FACTOR 44 1 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1229 Lja-Chr5 12366425 12367480 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1229 1 142 bZIP Transcription Factor Family AT3G62420 50.345 1.09e-43 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lja5g1229 bZIP_1 2.1e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1229 K25786 - gmx:780550 196.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1229 5 12366425 12367480 Lja5g1229 5 12366425 12367480 ECH
Lja1g0422 1 3721675 3722601 Lja5g1229 5 12366425 12367480 ECH
Lja1g0422 1 3721675 3722601 Lja5g1229 5 12366425 12367480 PCT