Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1226 ATGACTACTCCTGTGTGTGTTTTTCTAGTAGCGTATGGAGCACTCATAGGTGTTGTCTTGTTGATGCCATGCTGGTATGTCATGGTCACACATGTGGAGAAACATATGAATTTGAACTCAGAAAATATTATGTCTCAATTGCAATCAGAAACTGAAGTGTTACACCCATTGAAATCCTCATCAACCAATTTAGCAAGATTACTGACTTCCAACCTTCATACTAATAGTACCTCTTTCTCTGATATTCAGACCAAGGTGGCTCCGATATTGTTTCAAGAGTTCGAGACACTTCCTTACTTAACTCAAATCTCATACATGGGGATGGAAGGTCTCTTCTTCTCATACTACAATGATGATGATCAAGTTATAGCATTGTACTCCAACTCATCATCATCTCCGTCTTCTAGTTGGGGTGCCTCAAGGACTAATAAAACCTTATATTATACTCAACCTGTAAATCGTGAAAATGGAGAGGTTTATGGGGAAGCCATGTTGTCGAACTTTTCTATCAATGCAAGTTGGATTCAGGAAGCTCTTAATTTTTCGCATGGATTTTCCTCATTGGCAACCAAGTGGAGCAATGGTCATGATCTTTTATTCCTCTGTTCATCTAGAATCAAAAGAACAGGAGGAGTTATTTCTCTTGGGTTTTCAGCAAATGCAATAACTGATTCTGTCACTCGCATTAACCGTCAAGGCACAAGCTCATATTTGGCTACCAAAGATGGAAAAATTCTTGTTGAAGGGATTCAGCATACTAATTTGGTTATTTCTAATGATACAGTTTCTTTCCAATCAGTGAATGCAAATGGCAATTTGACAAGTAATGAGGGCACTGTCTCATGCAAAGGTGAAGCTGCTGCTGCTACTAGTTTGAATATTCAGGATACTGAATATTTAATTCACTGCTACCCCATTGATATTATGGGAATAGAATCGGTGTTTGTTTTGGCTGTCCCACAAAATGGATCTGTTAGCTTTGATCTCAGTAATATGAAAAAGGGATTAGCACTGATGATTGTAATGATGGTCATGGTATTTATTGCTATGTTCAGTTTTCTATTCATAAATGGTAGAGCTTTAAGGCGAGAAATGCACTTGTGTGCTTCACTCATCAAGCAAATGGAAGCCACTCAACAAGCTGAGAGAAAGAATATGAATAAGAGCCTTGCTTTTGCAAGTGCTAGCCATGATATTCGAAATTCTCTTGCATGCCTTACTGCCTTGATTGAAATGTCCCATGAGTTAGTTGACCCTAATTCAGAATTGGAGACCAATTTAAAACAAATGGAGGGTTGTACCCAAGACTTAATAGGATTGTTGAATTCTATACTTGACACAAGTAAGATTGAGGCAGGAAAAATGCAACTGGAGGAACAGGAATTTGATGTGTTCAATCTCCTAGAGGATGTAGTTGATTTATTCCATCCAGTGGCCATGAAGAAAGATGTAGATCTTGTGTTGGACCCTTGTGATGCTTCTGTTATCAGATACTCACGCGTGAAGGGTGACAAGGGTAAACTGAAACGAGTTCTATGTAACTTACTGAACAATGCTGTTAAGTTTACTGATGAAGGGCATATAACAGTTCGAGCATGGGTTCAGAAGCCAACAGTGCAGAACAGTACAGCAATCACCACCAGTACTAGCCAACATTATAGTTTCAACAAACTATTATCATCCTTATTTCTTGAGAAAAATGAACCAGATGATAAAGTTGAAGACGTAAACTCAGTTCAACAGGATACTTATTGTATGGATTTTGTGTTTGAAGTGGATGACACAGGGAAAGGAATTCCAAAAGACAAATACAAATCTGTGTTTGACAACTATGTTCAAGTGAAAGAAACTGCTCTTGGCCAAGGAGGAACTGGCTTGGGACTTGGCATTGTGAAATCATTGGTGCATTTGATGCATGGAGATATTGAAATTGTGGACAAGGATACCAATGAAAAAGGAACATGCTTCAGATTCAATGTGCATCTCACTTTTTGTGAGAGTGAGACAATGTTGGATTATGGTGGTGATACAATAAGCAGGGAAAATATAGAGCATGGACAAACTGATGCAAACCAGGCTCAGGCCGGTCGAACCATTCAAGCTAATTCTACTTCTGCAGCTTCAAGCATATGTTCCATGAGTCCAAGGTTAGATGTTTGCAGCTCTAGTCCTAGTCCTGAGGCATCCCAAGTTGTTCTTTTGATTGCAGACAAGGAGCGTCGAAGGACTTCACAAAGGTTCATAGAGAGCTTAGAGATTGAAGTTGAAGTTGTGAAGAAATGGGAAAATTTGTTTGATACTCTCATAAAGATCAAACAAAAGGGTCATCACAATTCCAATGGCCAAAATTCTCCTAAAGAGTCTTCAGATTTGAGTTCTTGGTCCACATCTCATGATTCTTATCTCAAAGCCAGAGGAATTCCTATAGATGGAAATGAGCACATATCTTCAATGTTGAAGAAAACAGGTAATGGAGCTGCTCCATGTTTCATCCTAATTGTGATTGATGCAAATGCAGGACCATTTTGTGAACTTAGTGAGATTGTGTCCAATTTCAAGAAGAAAGACCTTCCAAACCCTTGTAAGGTTGTTTGGTTGGATAAGCCACTTAAGCGTAGTGTCAATATTGAAACAATTGATGAAAATGACATTGTCTTATCCAAACCATTTCATGGTAGCCGCTTATTCCAAGTTATAAAGCTTCTTCCTGAGTTTGGTGGTGATTGGCAAAGCAATTCTAGTGAGGCTAAAGCAGAAGGTACTCTTCATGTGATGAAAAGTTCACACGAATCCTCAATTGATGAAAGCTCATTTCAAAGTGGTGAAGTGCAAATTTTGAAGACAACTCCTCAGAAATCCCATGTTAGCGGAGAGACACAAGAATGTGGAGACTCAAGCAATAGCAAACCCTTAAGTGGCAGGAAAATTTTGCTTGTTGAGGACAATCTAGTGTTACAAAATATAGCTTTGAAAACTTTGAGAGACCTTGGTGCTACTGATATTGAGAAATGTGTGAATGGTGAAGAAGCTGTGCTACTAGTTGATGAGGGACTCAAACGAGAGGATGCTGATCCTCCTTATCATTACATCTTAATGGATTGCCAGATGCCAGTTATGGATGGATTTGAAGCAACAAGGAAAATACGAGAGATGGAGAAGTCATATGGTGTTCACATTCCCATCATTGCATTAACTGCTCTCAGTGAGAAAATTACAGCAGAGGCTGGAAATGGAATGGACTTTCATATAGTCAAGCCAATCAAAAGAGAGAATTTACTTAAAGCCATGAGATCCGTACACACAAAAAAGAGTGACATGTAG 3321 0.389 MTTPVCVFLVAYGALIGVVLLMPCWYVMVTHVEKHMNLNSENIMSQLQSETEVLHPLKSSSTNLARLLTSNLHTNSTSFSDIQTKVAPILFQEFETLPYLTQISYMGMEGLFFSYYNDDDQVIALYSNSSSSPSSSWGASRTNKTLYYTQPVNRENGEVYGEAMLSNFSINASWIQEALNFSHGFSSLATKWSNGHDLLFLCSSRIKRTGGVISLGFSANAITDSVTRINRQGTSSYLATKDGKILVEGIQHTNLVISNDTVSFQSVNANGNLTSNEGTVSCKGEAAAATSLNIQDTEYLIHCYPIDIMGIESVFVLAVPQNGSVSFDLSNMKKGLALMIVMMVMVFIAMFSFLFINGRALRREMHLCASLIKQMEATQQAERKNMNKSLAFASASHDIRNSLACLTALIEMSHELVDPNSELETNLKQMEGCTQDLIGLLNSILDTSKIEAGKMQLEEQEFDVFNLLEDVVDLFHPVAMKKDVDLVLDPCDASVIRYSRVKGDKGKLKRVLCNLLNNAVKFTDEGHITVRAWVQKPTVQNSTAITTSTSQHYSFNKLLSSLFLEKNEPDDKVEDVNSVQQDTYCMDFVFEVDDTGKGIPKDKYKSVFDNYVQVKETALGQGGTGLGLGIVKSLVHLMHGDIEIVDKDTNEKGTCFRFNVHLTFCESETMLDYGGDTISRENIEHGQTDANQAQAGRTIQANSTSAASSICSMSPRLDVCSSSPSPEASQVVLLIADKERRRTSQRFIESLEIEVEVVKKWENLFDTLIKIKQKGHHNSNGQNSPKESSDLSSWSTSHDSYLKARGIPIDGNEHISSMLKKTGNGAAPCFILIVIDANAGPFCELSEIVSNFKKKDLPNPCKVVWLDKPLKRSVNIETIDENDIVLSKPFHGSRLFQVIKLLPEFGGDWQSNSSEAKAEGTLHVMKSSHESSIDESSFQSGEVQILKTTPQKSHVSGETQECGDSSNSKPLSGRKILLVEDNLVLQNIALKTLRDLGATDIEKCVNGEEAVLLVDEGLKREDADPPYHYILMDCQMPVMDGFEATRKIREMEKSYGVHIPIIALTALSEKITAEAGNGMDFHIVKPIKRENLLKAMRSVHTKKSDM* 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1226 1106 PRINTS Bacterial sensor protein C-terminal signature 622 640 IPR004358 GO:0016310|GO:0016772
Lja5g1226 1106 PRINTS Bacterial sensor protein C-terminal signature 588 602 IPR004358 GO:0016310|GO:0016772
Lja5g1226 1106 PRINTS Bacterial sensor protein C-terminal signature 606 616 IPR004358 GO:0016310|GO:0016772
Lja5g1226 1106 CDD HisKA 385 449 IPR003661 GO:0000155|GO:0007165
Lja5g1226 1106 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 375 455 IPR036097 GO:0000155|GO:0007165
Lja5g1226 1106 MobiDBLite consensus disorder prediction 947 969 - -
Lja5g1226 1106 Gene3D - 455 668 IPR036890 -
Lja5g1226 1106 CDD REC_hyHK_CKI1_RcsC-like 976 1096 - -
Lja5g1226 1106 SMART HisKA_10 387 453 IPR003661 GO:0000155|GO:0007165
Lja5g1226 1106 PANTHER HISTIDINE KINASE CKI1-LIKE 32 1098 - -
Lja5g1226 1106 ProSiteProfiles Response regulatory domain profile. 975 1100 IPR001789 GO:0000160
Lja5g1226 1106 PANTHER TWO-COMPONENT HISTIDINE KINASE 32 1098 - -
Lja5g1226 1106 ProSiteProfiles Histidine kinase domain profile. 394 664 IPR005467 -
Lja5g1226 1106 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 442 660 IPR036890 -
Lja5g1226 1106 Pfam Response regulator receiver domain 976 1096 IPR001789 GO:0000160
Lja5g1226 1106 SUPERFAMILY CheY-like 970 1099 IPR011006 -
Lja5g1226 1106 SMART HKATPase_4 503 664 IPR003594 -
Lja5g1226 1106 MobiDBLite consensus disorder prediction 775 794 - -
Lja5g1226 1106 Pfam His Kinase A (phospho-acceptor) domain 390 453 IPR003661 GO:0000155|GO:0007165
Lja5g1226 1106 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 503 662 IPR003594 -
Lja5g1226 1106 SMART REC_2 974 1096 IPR001789 GO:0000160
Lja5g1226 1106 Gene3D - 952 1105 - -
Lja5g1226 1106 Gene3D - 374 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1226 Lja-Chr5 12278990 12293328 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1226 4 1103 Histidine Kinase Gene Family AT2G47430 38.422 0.0 692
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja5g1226 HATPase_c 1.1e-24 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1226 - - cam:101504256 1228
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1226 5 12278990 12293328 Lja5g1226 5 12278990 12293328 ECH