Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1225 ATGGTTGTGAGAAACATGGAAGAAGTGGTATTGCTGATTGATGATCTGAGATCACTTTCTGGAATTTCTCGCTGTAGAATTTGTCATGAAGAAGAATTTGAAAGCTCCAAACAATTGGAAGCTCCCTGTGCTTGTTCTGGCACTGTTAAGTTTGCTCACAGAGATTGCATCCAGACATGGTGCAACGAGAAAGGAAACACAACTTGTGAAATATGTTTACAGCAATATGAACCTGGATACACTGCACCTCCAAAGAAATCTCCAATTTCTGATGCAGCAATGACTATTAGAGATAGCCTGCAAATTCCAAGGGAGCAAGAACAAATAAACACGAGAATAGTTGTGGGAATAGTTGAAGGAGTAAGAATACAAAACAATTACTCTGAATGCTCTTATGCTGCAGATAGAAGCGCATCTTGCTGTCGATCACTGGCTTTAGCTTTTACACTGATCTTGCTTGTGAGACATCTTTTCGCTTTGCTTACAAATGGAATGGAAGATTATCCATTTACAATTCTTACAGTCTTTATGCTAAGGGCCAGTGGAATTATTATACCCATGTACATAATTATTAAGACAATTGGAGGCATTCATGACAGTGTTCGGCGCCACTATCAGGATTCTGACGATGACACATCGATTTCTGATGAAGGTGATGAAGAAAATGAGGGACCGCATGGTGCAATTTTATTAAGACATTTATAG 705 0.3915 MVVRNMEEVVLLIDDLRSLSGISRCRICHEEEFESSKQLEAPCACSGTVKFAHRDCIQTWCNEKGNTTCEICLQQYEPGYTAPPKKSPISDAAMTIRDSLQIPREQEQINTRIVVGIVEGVRIQNNYSECSYAADRSASCCRSLALAFTLILLVRHLFALLTNGMEDYPFTILTVFMLRASGIIIPMYIIIKTIGGIHDSVRRHYQDSDDDTSISDEGDEENEGPHGAILLRHL* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1225 234 MobiDBLite consensus disorder prediction 205 226 - -
Lja5g1225 234 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 4 231 IPR033275 -
Lja5g1225 234 SMART ringv_2 24 73 IPR011016 GO:0008270
Lja5g1225 234 Pfam RING-variant domain 25 72 IPR011016 GO:0008270
Lja5g1225 234 SUPERFAMILY RING/U-box 24 77 - -
Lja5g1225 234 Pfam Protein of unknown function (DUF3675) 78 194 IPR022143 -
Lja5g1225 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 82 IPR013083 -
Lja5g1225 234 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 4 231 - -
Lja5g1225 234 CDD RING_CH-C4HC3_MARCH 25 72 - -
Lja5g1225 234 ProSiteProfiles Zinc finger RING-CH-type profile. 17 79 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1225 Lja-Chr5 12263093 12265339 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1225 25 72 C3H Transcription Factor Family AT2G37950 44.898 3.66e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1225 - - gmx:100797029 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1225 5 12263093 12265339 Lja5g1225 5 12263093 12265339 ECH
Lja1g0418 1 3680347 3682761 Lja5g1225 5 12263093 12265339 PCT