Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1220 ATGCTGCAAACGAGTAATCCATCGCGAGTGTTTCGCGGTGTTCACTTCGTTCTCATTGGGTTCGACCCCGTCACCGAAAGCAAGATTCGATTCAAGCTTGTGAATGGCGGTGGAGTTGATGTAGGCCAGTACAGTGGGAGATGCACGCATGTTATTGTTGATAACATTGCATATGATGATCCTGTGTGTGTTGCGGCCAGACGTGATGGGAAGACGCTGGTCACTGCACTGTGGGTTGAACACAGTGCTGATGTTGGAATGACGGTTGATTCTGCCTCGGTTATGTACAGACCACCCAAAGATTTAAATGGTATACCGGGTGCGAACGAATTGATTATGTGCCTGACTGGTTATCTACGCCAGGATCGGGATGACATTATGACAATGGTTGGCCTTATGGGGGCACAGTTTTCTAAACCATTGGTGGCAAACAAGGTTACTCATCTAATATGCTACAAATTTGAAGGGGAGAAGTACGAGCTTGCCAAGAAAATGGGCACGATAAAGCTAGTTAATCATCGTTGGTTGGAAGATTGCTTGAAGGATTGGGTGCTTCTTCCTGAAGACAAATATAACAAGAGCGGTTTTGAGCTAGAGATGGTGGAGGAGGCTAAGGATTCTGAGGACGAGGCTGAAGCTTCCAAGCTTGAGCAATCAGGTGGAAGAGATAGAAACAAAAGTCCTCTTAGTTCGAAACTTGGCATAGCTGCGATTCATGGATCTTCAAAATCAGTAAGAGAGACATCAAACCTCGTCTCAGATTCTACTGGTGTACAGGTTTTGCCAAATGTCAATAAGGTTACAGAGTCTTCACCCTCTCCAAGAAAAAAGAATAGATCTGATCAAGACTTAGGTTTGCATAATGTTGATGACCCGAAGATAAGCTGCAAGGCTTCTGATGTTTCTTTGCATTCTACATCATATCAGCTACCTGAAACATTTGTTAACATCAATGAGTCTAAGAAAGCTGATTTTCCAGAGGAGCTCAAACGGGAAGAATTTTGCAATATTGGAAACACAAATCAATCAGGCCAGCAACCTGATCTGCGTGATCATTCTTCAGAGTCCAAGAAGTCTGTACGTGATGTGAGATCAACTTCTGCAAATGCTGAAGGTCTTGTGCATTCAGAGGAAAAGCCTAGTGCTATGAGTTCTTCTAGGAAGAACCAAAAGAGATTTGCTCGTCCAAGGAACTTAGATGATTGCTCTGGCAGAGAAGGCAGCAGCCATGAAACCTCCTTCACCGAGGTAGAAAAGGCAAGTGGGGGAATCAAATCTACCTCTGTCAAAGGTTCTCGGAAAGGAAATGATTTTATTAAAGGGGATGAGCCAACTAGTTTATTGCCTCAAAAGAGGATAAATGAAGCTTCGTCTGCTAAATTAAAATCAAGAAAAGTGTCTACTGATACAAAGTTGTCCGTTGAAAGAGTCCCACTAACAAATGGTAAATCTGAAGGATTAAAAGTAACATCTGCTGTTGATGAATCTATCTCAAGAAATGCTAGCTCAGAGTCTGCTCAATGTGATAATGTCCATCAGAATTCACCACAAATGGTTGTTCAGAGCTCAAGTAAGTCTAAAGTTAATAGTGAGCCTGATATCACAGCTTTTGGAACAGGACAAGATGCTGATGAAGTAGGGAAACTTAATGTTACTAAAGATAAGTGTTGTCCATCACCAGGAAACAAAATGTTGCTGAATGAGGAGTCCGCTGGTATTGATAATTTGGATATTAACAATGAAGAAAGTAATAAGCCTAGAAAAAAATCACCCCGCAAGAAGTCGGTGGCCAAAAGAAGTTGGGGTTCTAAACCCAAAACAGGTGTCGCTGCAAAACTGAAAACTTCAGCTTCCTTGAATAAAACTACCACGCAAGGTGGAGGTATAGAATTTTCCTGTGGGGGCAAAGAGGTAGCAAAACTGAAAACTTCAGCTTCCTTGAATAAAACTACCACGCAAGGTGGAGGTATAGAATTTTCCAGTGGGGGCAAAGAGGTAGCAACTTGTGGTCCCCAAAAGCATGAGGCATCCCCTCAAATCCTTGATGCTAATAAATTGAAGGAACAAGAAACTGCTGGTAACTATGCAGAAGATGCTGGTGTCAGAACTGAATTTTTGGATGACGAAACAGAGGCTCCAGATGACAAATGTGAAAATCTGTTCGGATTGTCTCTTGATGAAGATTCAGTTCATCTTTCAAAGAAGGAGGACACTTCAGCAGAAGAAAAGTCAGAAGTTATTCATGGAAAAAAAAGTGAAGAAGCAATGCCTCCTAAGAAAAGCACAAATGAAGCTGAAAAACAGAATCTAACTTCACCGGTTGACTCAATCTCAAAGTCAAAAGTGAAGCATCAAGCAAGAAAGCGCCCTGCAGGTAAAACCAAAAAGGCCACAGTTGCAAAGGATTTATCAAAATCTGGTAAGGCAGTATCTGAAGAGAATATCCCAAATGGGACGAGAGATGAGGCACAAATAGAAATTGAGGAAGAAATATTCCTAACTGCTGATGTAAGTGACAACTCAACTGTGCTGAGAAATAAATCAGAGAATTCTATTGAAGACGAGAAGGAGAATAGACCAATTGATAAAGAGCAAGATGTAATGGGAGGCAGAAAGGTTGGAAATAAATCTAGTGTAAAGCCAGCAAAGATCAACTCTAAGAAAATGGGGCTCAATCCTTCCATATCTGAATCTAAAGCAAGAGCCATAACTGAGGCCAGATGTTTTATATTAAGTGGGCATCGTCTTCAGAGAAAGGAGTTTCAACAAGTAATCAAGCGTTTGAAAGGGAGGGTTTGCCGGGATTCTCATCAGTGGTCGTATCAGGCGACACACTTCATAGCTCCAGATCCTTTACGCAGAACAGAGAAATTTTTTGCGGCTGCTGCATCAGGAAGGTGGATTCTTACAACTGATTTTTTAACGGCAAGTAGCCAGGCAGGAAAGCTCTTGCCAGAGGAGCCTTATGAGTGGCACAAGACTGGTCTCAACGAGGATGGTGCAATCAACATGGAGGCTCCAAGAAAGTGGCGGCTCTTGAGGGAAAGAACCGGTCATGGCGCCTTCTACGGGATGCGCATTGTTGTATACGGCGATTGTATCACCCCGCCTTTGGATACACTGAAGCGAGTGGTCAAAGCTGGAGATGGAACAATATTAGCAACTTCTCCACCATATACTCGCTTCCTTGGCACCGGGATCGACTATGCCATAATTAGCCCTGGCATGCCACGTGTTGATATATGGGTCCAAGAGTTCTTAAAACATGAGATACCTTGTATTGTTGCGGACTACTTGGTCGAGTATGTCTGCAAGCCTGGGTTCCCCCTCGAGAGACATGTATTATATGGTACTAATACTTGGGCAGAGAGGTCATATGCAAACCTTCAAAGTAGGGCAGAAGAGGTTCTTGAGGAGGTCATTCCTGAGGATTTCAGTGCTGGTGATATACCTTGCCAAGTATGTGGATCCAGGGACAGAGGAGATGTAATGCTAATTTGTGGTGATGAAAGTGGCTCCCTTGGCTGTGGAATTGGTACTCATATCGATTGCTGCGATCCTCCATTGCCAGAAGTTCCTGAGGAGGATTGGTTCTGTCCAAAATGCAGTAGCACCCAAAACTGGTCAAACAATCCAGCTAAAAAGAAAAAGCGTGCACTGTCTTTATCTAAGAGTAAGTGA 3681 0.4303 MLQTSNPSRVFRGVHFVLIGFDPVTESKIRFKLVNGGGVDVGQYSGRCTHVIVDNIAYDDPVCVAARRDGKTLVTALWVEHSADVGMTVDSASVMYRPPKDLNGIPGANELIMCLTGYLRQDRDDIMTMVGLMGAQFSKPLVANKVTHLICYKFEGEKYELAKKMGTIKLVNHRWLEDCLKDWVLLPEDKYNKSGFELEMVEEAKDSEDEAEASKLEQSGGRDRNKSPLSSKLGIAAIHGSSKSVRETSNLVSDSTGVQVLPNVNKVTESSPSPRKKNRSDQDLGLHNVDDPKISCKASDVSLHSTSYQLPETFVNINESKKADFPEELKREEFCNIGNTNQSGQQPDLRDHSSESKKSVRDVRSTSANAEGLVHSEEKPSAMSSSRKNQKRFARPRNLDDCSGREGSSHETSFTEVEKASGGIKSTSVKGSRKGNDFIKGDEPTSLLPQKRINEASSAKLKSRKVSTDTKLSVERVPLTNGKSEGLKVTSAVDESISRNASSESAQCDNVHQNSPQMVVQSSSKSKVNSEPDITAFGTGQDADEVGKLNVTKDKCCPSPGNKMLLNEESAGIDNLDINNEESNKPRKKSPRKKSVAKRSWGSKPKTGVAAKLKTSASLNKTTTQGGGIEFSCGGKEVAKLKTSASLNKTTTQGGGIEFSSGGKEVATCGPQKHEASPQILDANKLKEQETAGNYAEDAGVRTEFLDDETEAPDDKCENLFGLSLDEDSVHLSKKEDTSAEEKSEVIHGKKSEEAMPPKKSTNEAEKQNLTSPVDSISKSKVKHQARKRPAGKTKKATVAKDLSKSGKAVSEENIPNGTRDEAQIEIEEEIFLTADVSDNSTVLRNKSENSIEDEKENRPIDKEQDVMGGRKVGNKSSVKPAKINSKKMGLNPSISESKARAITEARCFILSGHRLQRKEFQQVIKRLKGRVCRDSHQWSYQATHFIAPDPLRRTEKFFAAAASGRWILTTDFLTASSQAGKLLPEEPYEWHKTGLNEDGAINMEAPRKWRLLRERTGHGAFYGMRIVVYGDCITPPLDTLKRVVKAGDGTILATSPPYTRFLGTGIDYAIISPGMPRVDIWVQEFLKHEIPCIVADYLVEYVCKPGFPLERHVLYGTNTWAERSYANLQSRAEEVLEEVIPEDFSAGDIPCQVCGSRDRGDVMLICGDESGSLGCGIGTHIDCCDPPLPEVPEEDWFCPKCSSTQNWSNNPAKKKKRALSLSKSK* 1227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1220 1226 MobiDBLite consensus disorder prediction 338 470 - -
Lja5g1220 1226 MobiDBLite consensus disorder prediction 202 231 - -
Lja5g1220 1226 SUPERFAMILY FYVE/PHD zinc finger 1139 1208 IPR011011 -
Lja5g1220 1226 MobiDBLite consensus disorder prediction 689 817 - -
Lja5g1220 1226 MobiDBLite consensus disorder prediction 393 413 - -
Lja5g1220 1226 MobiDBLite consensus disorder prediction 762 779 - -
Lja5g1220 1226 SUPERFAMILY BRCT domain 6 92 IPR036420 -
Lja5g1220 1226 MobiDBLite consensus disorder prediction 485 612 - -
Lja5g1220 1226 MobiDBLite consensus disorder prediction 1205 1226 - -
Lja5g1220 1226 MobiDBLite consensus disorder prediction 649 677 - -
Lja5g1220 1226 Pfam twin BRCT domain 111 175 IPR001357 -
Lja5g1220 1226 MobiDBLite consensus disorder prediction 208 222 - -
Lja5g1220 1226 ProSiteProfiles BRCT domain profile. 899 991 IPR001357 -
Lja5g1220 1226 SUPERFAMILY BRCT domain 908 994 IPR036420 -
Lja5g1220 1226 MobiDBLite consensus disorder prediction 272 291 - -
Lja5g1220 1226 CDD BRCT_PAXIP1_rpt3 13 90 - -
Lja5g1220 1226 Gene3D BRCT domain 901 1017 IPR036420 -
Lja5g1220 1226 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 1 1202 IPR044254 -
Lja5g1220 1226 Gene3D BRCT domain 1018 1119 IPR036420 -
Lja5g1220 1226 MobiDBLite consensus disorder prediction 350 364 - -
Lja5g1220 1226 MobiDBLite consensus disorder prediction 728 761 - -
Lja5g1220 1226 MobiDBLite consensus disorder prediction 414 433 - -
Lja5g1220 1226 ProSiteProfiles BRCT domain profile. 6 96 IPR001357 -
Lja5g1220 1226 MobiDBLite consensus disorder prediction 246 291 - -
Lja5g1220 1226 CDD BRCT_TopBP1_rpt7 907 981 - -
Lja5g1220 1226 ProSiteProfiles BRCT domain profile. 111 193 IPR001357 -
Lja5g1220 1226 MobiDBLite consensus disorder prediction 485 536 - -
Lja5g1220 1226 SMART BRCT_7 99 183 IPR001357 -
Lja5g1220 1226 SMART BRCT_7 8 86 IPR001357 -
Lja5g1220 1226 SMART BRCT_7 901 981 IPR001357 -
Lja5g1220 1226 SMART BRCT_7 1019 1106 IPR001357 -
Lja5g1220 1226 Gene3D BRCT domain 100 226 IPR036420 -
Lja5g1220 1226 MobiDBLite consensus disorder prediction 246 271 - -
Lja5g1220 1226 Gene3D BRCT domain 1 95 IPR036420 -
Lja5g1220 1226 SMART PHD_3 1151 1203 IPR001965 -
Lja5g1220 1226 ProSiteProfiles Zinc finger PHD-type profile. 1149 1205 IPR019787 -
Lja5g1220 1226 Pfam PHD-finger 1152 1204 IPR019787 -
Lja5g1220 1226 Pfam BRCA1 C Terminus (BRCT) domain 913 976 IPR001357 -
Lja5g1220 1226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1143 1225 IPR013083 -
Lja5g1220 1226 SUPERFAMILY BRCT domain 110 192 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1220 Lja-Chr5 12181135 12188131 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1220 129 234 Core DNA Replication Machinery Family AT4G02110 65.421 1.00e-35 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lja5g1220 BRCT 1.1e-06 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1220 K10728 - jre:109009928 991.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1220 5 12181135 12188131 Lja5g1220 5 12181135 12188131 ECH