Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1214 ATGGGAAGGGCTCCTTGTTGTGAGAAAGTGGGGTTGAAGAGAGGGAGGTGGACAGCAGAGGAGGATGAAATTTTATTGAAATACATTCAGGCAAATGGGGAAGGTTCGTGGAGGTCATTGCCCAAAAATGCAGGATTGTTGAGGTGTGGAAAGAGTTGCAGACTAAGATGGATTAACTATTTAAGGACTGACCTCAAAAGAGGCAACATTTCTGCTCAAGAGGAAGATACCATCGTAAAGCTGCACGCTTCTTTTGGCAACAGATGGTCATTGATAGCAAGTCACTTGCCAGGGCGAACGGACAACGAGATAAAAAATTACTGGAACTCTCATTTGAGCAGAAAAATCTACAGTTTTCATAGGGTAACTACTACTTCTACTACTACTACTATTGAGCCAAGGGTGCTGATGAGCATTCCTCCTCGCCCGCGAAGGGGTGGCAGAACTAGCCGTCGGGCCATGAAGAAGAACAAAAGCAGCTACACCCAAACTCAGATCAGGCCTAATAAACCAACTGTAATTTCGCAACCGAATAATGAAACTGCAGTTCCACTACCACCACTGCTGCCGGCCCCGTCACTAGAAAAAGCAGCAGGGGTTGCTGATGAGGCAAGAAGTGAGGATTTGGAATTGACAGAAACCACCGATGACGACGACATCTTCCTAGAACTGTTGGAGGTGGAGGGAGACATTAATGGCGGCACTGGTGGGGCGTTACGTTTGAGTGAGATGATAGAGAGTTGTTTGGTGGAAGAAGGAGAAGAAGGATGTGGGGTTCCGACATTAATTGCTGAGAATAGAGGGGACAAATGCAATGACGTGGAGGGAAATGAAATACGATGGAATAAGAATGAAGACAAAATGGTATCATCATCGTCATCATCATCATGTGAAGATCACAAGGAGAGTAGCAGCAGTGTGAATTTGGACGGTGGTGATGATAACTGGAATTGGGAGAGTGTGATGGAGTTTAATGAGGTTGATGATGCATGGGAGCATAAAGAAAAACTGCTTACGTGGCTGTGGAATGATGATGATGACTGGGAAAGCGATGGCAACAACAACTTGGGAGAGATGATGGATCCTGAGAAACAAAATGATGTTATTGCTTGGTTTCTGTCTTGA 1125 0.4524 MGRAPCCEKVGLKRGRWTAEEDEILLKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRTDLKRGNISAQEEDTIVKLHASFGNRWSLIASHLPGRTDNEIKNYWNSHLSRKIYSFHRVTTTSTTTTIEPRVLMSIPPRPRRGGRTSRRAMKKNKSSYTQTQIRPNKPTVISQPNNETAVPLPPLLPAPSLEKAAGVADEARSEDLELTETTDDDDIFLELLEVEGDINGGTGGALRLSEMIESCLVEEGEEGCGVPTLIAENRGDKCNDVEGNEIRWNKNEDKMVSSSSSSSCEDHKESSSSVNLDGGDDNWNWESVMEFNEVDDAWEHKEKLLTWLWNDDDDWESDGNNNLGEMMDPEKQNDVIAWFLS* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1214 374 Gene3D - 11 67 - -
Lja5g1214 374 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 353 - -
Lja5g1214 374 MobiDBLite consensus disorder prediction 138 185 - -
Lja5g1214 374 CDD SANT 16 61 IPR001005 -
Lja5g1214 374 MobiDBLite consensus disorder prediction 156 182 - -
Lja5g1214 374 PANTHER MYB TRANSCRIPTION FACTOR 2 353 - -
Lja5g1214 374 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lja5g1214 374 Gene3D - 71 116 - -
Lja5g1214 374 MobiDBLite consensus disorder prediction 286 312 - -
Lja5g1214 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja5g1214 374 SMART sant 66 114 IPR001005 -
Lja5g1214 374 SMART sant 13 63 IPR001005 -
Lja5g1214 374 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja5g1214 374 CDD SANT 71 112 IPR001005 -
Lja5g1214 374 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja5g1214 374 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja5g1214 374 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lja5g1214 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja5g1214 374 MobiDBLite consensus disorder prediction 284 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1214 Lja-Chr5 12141186 12144277 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1214 1 374 MYB Transcription Factor Family AT2G47460 42.893 1.09e-81 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja5g1214 Myb_DNA-binding 2.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1214 K09422 - gmx:100793350 309.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1214 5 12141186 12144277 Lja5g1214 5 12141186 12144277 ECH
Lja1g0411 1 3599617 3602769 Lja5g1214 5 12141186 12144277 PCT