Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1205 ATGGGAAGAACAATTGCTAAGAAGAATTCTCCTTCCACCGCCACCGCAACACACCCTCCTTACTTCGAAATGATTGCGGATGCGATATCCACGTTGAAAGAGAGCAACGGTTCGAGCCAGCAAGCCATAGCCAAGTTCATCGAGGAGAAGCACGACAAGGTGCTACCTCCAAACTTCAGGAAACTGCTCTCGCTCCAGTTGAAGAATTTGGTCAACTCGCAGAGGCTCTGCAAGGTGAAAAACTCGTACAAGATCTCCTCCGGCGAGATTGGTGAGAAGAAGAAGAAGGAGAAGAAGGAGAAGGTCAAGATGCTGTGTCAGATCAAGACACCCGAAGCTCTTAAGATTAAGGAGAAAGTGAAGCTTCTGAGTGAGGTGAAGACCCCTGAAGCAATGAAGAAGAAGAAGCCCATTGACTCGACCAAGCCCAAGCCCATCAATTCTTCCAGGCCCACCAGGAAAGCTAGGAAATGA 474 0.4873 MGRTIAKKNSPSTATATHPPYFEMIADAISTLKESNGSSQQAIAKFIEEKHDKVLPPNFRKLLSLQLKNLVNSQRLCKVKNSYKISSGEIGEKKKKEKKEKVKMLCQIKTPEALKIKEKVKLLSEVKTPEAMKKKKPIDSTKPKPINSSRPTRKARK* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1205 157 CDD H15 15 82 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja5g1205 157 Gene3D - 13 103 IPR036388 -
Lja5g1205 157 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 17 87 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja5g1205 157 PANTHER HISTONE H1 7 149 - -
Lja5g1205 157 MobiDBLite consensus disorder prediction 126 157 - -
Lja5g1205 157 MobiDBLite consensus disorder prediction 126 141 - -
Lja5g1205 157 Pfam linker histone H1 and H5 family 18 81 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja5g1205 157 SUPERFAMILY "Winged helix" DNA-binding domain 15 99 IPR036390 -
Lja5g1205 157 PANTHER HISTONE H1 7 149 - -
Lja5g1205 157 SMART h15plus2 15 82 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1205 Lja-Chr5 12085692 12086252 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1205 11 134 Single Myb Histone (SMH) Gene Family AT1G72740 33.858 1.31e-14 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1205 K11275 - gmx:100306187 148.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1205 5 12085692 12086252 Lja5g1205 5 12085692 12086252 ECH