Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1200 ATGGCGGCATTGTCGTTTTCAGTGGCGTCAGTGGTGGAGAATGTGCTTCAACAGCATGGTCGCCTCAAGGATCTTGATTTGGAATCTAGAAAAGCAGAAGAAGCTGCATTCAGAAGGTATGAAGCGGCAGGGTGGCTGAGAAAAATGGTTGGAGTTGTTGCTGCTAAAGATTTACCAGCAGAGCCCTCTGAGGAAGAGTTTAGGCTTGGTTTGAGGAGTGGGATCATTCTCTGCAATGTTCTAAACAAGGTTCAACCAGGTGCTGTACCCAAGGTTGTGGAGAGTCCTGTTGATTCTGCACAAATCCCTGATGGAGCACCCTTATCGGCATTTCAGTATTTTGAAAATGTGAGGAACTTTCTGGATGCTATCCAGGAAATTGGAATTCCTACCTTTGAGGCTTCTGATCTGGAACAAGGAGGAAAATCAGCCAGGGTTGTTAACAGTGTCATGGCCCTTAAATCCTATAGTGAATGGAAACAAACTGGTGCTGATGGTGTGTGGAAATTTGGTGGAACTATCAAGCCAACAATATCTTCAAAATCTTTTGTGAGAAAAAACTCAGAGCCATTTACTAATTCCTTGTCAAGGAACTCGTCCTGCAGTGAAAAATCTCTCACTGCTTTTACCTCTGATGTTGAGTCTAATAAAATGTCTGGTTCTTATTCTTTGGGTATGCTTGTTCGTGCAATACTGTTAGATAAGAAGCCAGAAGAAGTTCCAATGTTAGTTGAATCTGTCTTAAATAAGGTTGTAGAGGAGTTTGAGCATCGCATAGCAAGCCAAGGTGAACAGCCAAAAACAACTTCAAGGGCTCCTGTGTCCCAAAGCAATGGATCTATGTCAAAGTTTGTTATGGCAGATAAAAAGGCGAATAACAAGATTCCTGTGGTAACAAAGAAAGATGAATTCAGCCATAAAAAACATGTTGCTGACAAGGATTCGCAAAGACAACTTCTGAAGCAGAAAATGCTCTTTGATCAACACCAGAATGATATTCAAGCACTAAAGCATACAATTCACACCACCAAAGCTGGAATGCAGTTCATGCAGATGAAATTTCATGAGGAGTTCTCCAATCTAGGCATGCACATTCATGGCTTAGCTCATGCTGCTTCTGGGTATCATAGAGTTCTTGAAGAAAATCGCAAACTATACAATCAAGTCCAGGATCTTAAGGGAAGTATTAGGGTGTACTGTAGAGTAAGGCCCTTCTTATCTAGGCAATCAAATTATTTGAGCTCAGTGGATAGTATAGAAGATGGAACTATCACAATTAATGTTCCTTCAAAGAATGGGAAAGGGCGCAGATCCTTCAACTTCAACAAAGTCTTTGGACCATCTGCAGCTCAAGCGGAGGTCTTCTCCGATATGCAGCCACTCATTAGGTCCGTTCTTGATGGATTTAATGTTTGCATATTTGCTTATGGCCAAACAGGATCAGGAAAAACTTACACTATGACCGGACCGAAAGAGATTACAGAAAAAAGCCAAGGTGTAAATTACAGGGCTCTGAGTGATTTGTTTCTTACAGCAGATCAAAGAAAGGGCACTTTTCGCTATGATGTGTCTGTTCAAATGATTGAGATTTATAATGAGCAAGTCAGGGATCTGTTGGTTTCTGATGGAACAAACAAAAGATTAGAAATTCGTAGTAATTCTCATAAAGGACTCAGTGTACCAGATGCAAGCCTTGTCCCAGTATCATCAACACATGATGTTATTGAACTGATGAACCTGGGCCAAAGGAACCGTGCAGTTGGAGCAACAGCTCTTAATGACCGTAGTAGCCGATCTCACAGTTGCTTGACTGTTCATGTTCAAGGAAGAGACTTGACATCCGGAGCGGTCCTACGAGGATGCATGCATCTGGTTGACTTGGCGGGAAGTGAGAGGGTTGATAAATCTGAGGCCACAGGAGATAGACTGAAAGAGGCACAGCATATTAACAAATCTCTTTCAGCTCTGGGTGATGTCATTGCTTCCCTTGCTCAGAAAAACAACCATGTCCCTTACAGAAATAGCAAACTCACACAACTACTTCAAGATTCACTTGGAGGACAGGCCAAGACACTAATGTTTGTGCACATAAGTCCAGAGGTTGATGCTGTTGGAGAAACAATTAGCACCTTAAAATTTGCAGAAAGAGTTGCAACAGTTGAACTTGGTGCTGCTCGAGTAAACAAGGACGGGGCAGATGTCAAAGAGCTCAAAGAACAGATTGCCAACCTTAAGGCTGCATTGGCAAGAAAGGAAGAAGAATCAGAACATTCTTTGTCTGGCAGCTCTGGAAAATATGGGAGAACAGCTAGTGAGCTATCACCTTATCATGCAAACCAGTGGGGTGAGGATATTGGGTGCCAGCAACCTATGGTTGGTGTAGGCAACACAGAGCTTCACCATAATACCCCATTAAGGAAAAAAAATCAGAGCTTTGATTTTGATGAGATGTCAACAAATTCAGAGATTCACAGTAATACCACCCCATTAAGGAAAAAAACTCAGAGCTTTGATTTTGATGAGATATCAACGAATTCACCACCCTGGCCCCCAGTGAAAAGTCCAGGACAAAACTCTGGGGAAGATGATAAAGAAACTGGTTCTGGAGACTGGGTTGATAAAGTCATGGTAAACAAGCAAGATGCAGGAAAAACCGCGAACATCTTAGGGTGTTGGGAAGAAGATAATGAGCAAATGTCCGAGGTCTTTTATCAGAAATATCTCCAAGATTCTTCCAAAACTTACTCGGAACGACCATACAACACGTTCATGGGTGGCAACAAGTTCAACATTGCGGGTTCAGATGACATGGATGATCTTGATGCTGCAACCAGTGATTCCTCAGAACCTGACTTACTTTGGCAATTTAATCATTCCAAACTTACCAGCATAGCCAATGGCAATGGATCAAAGGCTAGGAAACCTATCTCAAAGTCAGCAAAAAGCCCAGAATTGAGCAAGAACAGTATTCATTCTTCTTCTCTTGGTCCTTCACCTTCACGCAAACAAACAAATGGTGGTGTCTCACATCGAACAGGAAGGCATCCAGCTCCAATTGACATGAAACGTAAGACTGGAAGTAGAAAGTAA 3090 0.4223 MAALSFSVASVVENVLQQHGRLKDLDLESRKAEEAAFRRYEAAGWLRKMVGVVAAKDLPAEPSEEEFRLGLRSGIILCNVLNKVQPGAVPKVVESPVDSAQIPDGAPLSAFQYFENVRNFLDAIQEIGIPTFEASDLEQGGKSARVVNSVMALKSYSEWKQTGADGVWKFGGTIKPTISSKSFVRKNSEPFTNSLSRNSSCSEKSLTAFTSDVESNKMSGSYSLGMLVRAILLDKKPEEVPMLVESVLNKVVEEFEHRIASQGEQPKTTSRAPVSQSNGSMSKFVMADKKANNKIPVVTKKDEFSHKKHVADKDSQRQLLKQKMLFDQHQNDIQALKHTIHTTKAGMQFMQMKFHEEFSNLGMHIHGLAHAASGYHRVLEENRKLYNQVQDLKGSIRVYCRVRPFLSRQSNYLSSVDSIEDGTITINVPSKNGKGRRSFNFNKVFGPSAAQAEVFSDMQPLIRSVLDGFNVCIFAYGQTGSGKTYTMTGPKEITEKSQGVNYRALSDLFLTADQRKGTFRYDVSVQMIEIYNEQVRDLLVSDGTNKRLEIRSNSHKGLSVPDASLVPVSSTHDVIELMNLGQRNRAVGATALNDRSSRSHSCLTVHVQGRDLTSGAVLRGCMHLVDLAGSERVDKSEATGDRLKEAQHINKSLSALGDVIASLAQKNNHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEVDAVGETISTLKFAERVATVELGAARVNKDGADVKELKEQIANLKAALARKEEESEHSLSGSSGKYGRTASELSPYHANQWGEDIGCQQPMVGVGNTELHHNTPLRKKNQSFDFDEMSTNSEIHSNTTPLRKKTQSFDFDEISTNSPPWPPVKSPGQNSGEDDKETGSGDWVDKVMVNKQDAGKTANILGCWEEDNEQMSEVFYQKYLQDSSKTYSERPYNTFMGGNKFNIAGSDDMDDLDAATSDSSEPDLLWQFNHSKLTSIANGNGSKARKPISKSAKSPELSKNSIHSSSLGPSPSRKQTNGGVSHRTGRHPAPIDMKRKTGSRK* 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1200 1029 MobiDBLite consensus disorder prediction 963 1010 - -
Lja5g1200 1029 SUPERFAMILY Calponin-homology domain, CH-domain 39 168 IPR036872 -
Lja5g1200 1029 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 395 754 IPR027417 -
Lja5g1200 1029 SMART ch_5 38 156 IPR001715 GO:0005515
Lja5g1200 1029 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 821 1026 - -
Lja5g1200 1029 Coils Coil 727 754 - -
Lja5g1200 1029 MobiDBLite consensus disorder prediction 262 278 - -
Lja5g1200 1029 MobiDBLite consensus disorder prediction 798 870 - -
Lja5g1200 1029 MobiDBLite consensus disorder prediction 1015 1029 - -
Lja5g1200 1029 Pfam Calponin homology (CH) domain 39 158 IPR001715 GO:0005515
Lja5g1200 1029 Pfam Kinesin motor domain 401 719 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja5g1200 1029 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 2 821 - -
Lja5g1200 1029 MobiDBLite consensus disorder prediction 963 1029 - -
Lja5g1200 1029 Gene3D - 23 185 IPR036872 -
Lja5g1200 1029 ProSiteProfiles Calponin homology (CH) domain profile. 36 158 IPR001715 GO:0005515
Lja5g1200 1029 ProSiteProfiles Kinesin motor domain profile. 395 720 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja5g1200 1029 Gene3D Kinesin motor domain 390 761 IPR036961 -
Lja5g1200 1029 MobiDBLite consensus disorder prediction 259 278 - -
Lja5g1200 1029 CDD KISc_C_terminal 393 722 - -
Lja5g1200 1029 SMART kinesin_4 393 728 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja5g1200 1029 MobiDBLite consensus disorder prediction 814 843 - -
Lja5g1200 1029 MobiDBLite consensus disorder prediction 749 770 - -
Lja5g1200 1029 PANTHER KINESIN-LIKE PROTEIN KLP-3 821 1026 - -
Lja5g1200 1029 PANTHER KINESIN-LIKE PROTEIN KLP-3 2 821 - -
Lja5g1200 1029 PRINTS Kinesin heavy chain signature 670 691 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja5g1200 1029 PRINTS Kinesin heavy chain signature 468 489 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja5g1200 1029 PRINTS Kinesin heavy chain signature 621 639 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja5g1200 1029 PRINTS Kinesin heavy chain signature 590 607 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1200 Lja-Chr5 12014247 12020963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1200 383 720 Calmodulin-binding Proteins AT5G65930 42.442 5.39e-78 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1200 K10406 - gmx:100801279 1667.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1200 5 12014247 12020963 Lja5g1200 5 12014247 12020963 ECH
Lja1g0401 1 3540942 3546547 Lja5g1200 5 12014247 12020963 ECH
Lja1g0401 1 3540942 3546547 Lja5g1200 5 12014247 12020963 PCT