Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1197 ATGGTGTCGTTGAAGCTTCAGAAGCGGCTCTCCGCCAGCGTTCTCAAGTGTGGTAGGGGCAAGGTCTGGCTTGACCCTAATGAGGTCAATGAAATCTCCATGGCCAATTCTCGCCAGAACATTAGGAAGTTAGTTAAGGATGGCTTCATTATCAGGAAGCCAACTAAGATTCACTCTCGCTCTCGAGCTAGGAGGATGAAGGAGGCTAAGAGGAAGGGACGTCACTCTGGATACGGTAAGCGCAAGGGTACCAGAGAGGCAAGGCTTCCCACCAAGATCCTTTGGATGCGGAGGATGCGTGTCCTCAGGCGTTTGCTTCGCAAGTACAGGGAGGCAAAGAAGATTGACAAGCACATGTACCATGATATGTACATGAAGGTGAAGGGTAATGTGTTTAAGAACAAGAGAGTCCTTATGGAGAGTATTCACAAGTCCAAGGCTGAGAAGGCAAGAGAAAAGACTTTATCTGACCAGTTTGAGGCTAAGAGAGCAAAGAACAAGGCTAGCAGGGAAAGGAAAAATGCTAGGAGAGAAGAGCGCCTTGCCCAAGGTCCTGGAGAGAAGGCTGCACCGGCTGCCCCAGCTGCAACAGCAGCCCAGCCAGCCCAAGCAACTAAGAAATCCAAGAAGTAA 633 0.4992 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKNARREERLAQGPGEKAAPAAPAATAAQPAQATKKSKK* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1197 210 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Lja5g1197 210 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Lja5g1197 210 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Lja5g1197 210 Gene3D - 57 190 - -
Lja5g1197 210 MobiDBLite consensus disorder prediction 57 79 - -
Lja5g1197 210 MobiDBLite consensus disorder prediction 144 210 - -
Lja5g1197 210 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Lja5g1197 210 PANTHER 60S RIBOSOMAL PROTEIN L19 1 210 IPR039547 GO:0003723|GO:0003735|GO:0022625
Lja5g1197 210 PANTHER RIBOSOMAL PROTEIN L19 1 210 - -
Lja5g1197 210 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Lja5g1197 210 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Lja5g1197 210 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Lja5g1197 210 Coils Coil 158 181 - -
Lja5g1197 210 MobiDBLite consensus disorder prediction 57 85 - -
Lja5g1197 210 MobiDBLite consensus disorder prediction 144 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1197 Lja-Chr5 11987001 11989127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1197 1 210 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 84.286 1.35e-126 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1197 K02885 - gmx:100499883 361.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1197 5 11987001 11989127 Lja5g1197 5 11987001 11989127 ECH