Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1186 ATGAGGAATCTCAGAAGAGCAGCACCGATTCTACCTCTTGTACTCATCTTGACCATAGTGTTTCCACTACTCATTTTCAAAACCCATTTCACTGAAACCAAACCACAAGAAAAACACCTCCACATCCAAAAGCACATACAAACAGCCCAATCCACATGCCAAGGAACACTCTACCCAGACCTATGTGTCTCCACCCTCACCACATTCCCAGATCTCACCTTAAAATCTGTCCCACAAATGATCTCCTCCATGGTCAACCACACTGTCAACGAAGTCAAAGCCTCCTCCTACAACTGCACCGGCCTCAAAAAGCAGCTCAAAAACCTCCAGCCACTGGAACAAAGAGCACTCGACGACTGTCTCCATCTCTTCGACGACACCGTTCTGGAGCTCAAAACCACCATTTCCGACCTCTCCAAAGCCACAATAGGCTCCAAGAGGCGCCATGACTTGCAGACATTGTTAAGCGGCGCCATGACTAACTTGTACACTTGCCTTGACGGTTTTGCTTACAGCAAAGGGAACGTGAGAAGGAGAATTGAGAAGAAGCTGATTCGGATATCGCGTCATGTTAGCAACGCTTTGGCAATGTTCAAGAAAGTTCCTCAAGTGAAGGAAAAAATGTCTGAGAATGATGAGGTTTTTCCTGAATATGGTAAAATGAAAAACGGGTTTCCTTCTTGGGTTTCCAACAAAGACAGAAAGCTTCTTCAAGCTTCTGTGAGTGAGACTAAGTTTGATCTTGTTGTTGCTAAAGATGGTAGTGGGAATTTTACTACTATTGGGGAAGCAGTGAATGTGGCTCCTAACTCTAGCACTACCAGGTTTGTGATACACATAAAAGCTGGGGCGTACTTTGAGAATGTGGAGGTGATCAGGAAGAAGAGCAATCTGGTGTTTGTAGGAGATGGGATTGGAAAGACGGTGGTGAAAGCTAGTAGGAATGTTGTGGATGGCTGGACTACTTTCCAATCAGCTACTGTAGCTGTAATTGGAGACAGATTCATAGCAAAAGGCATAACCTTCGAGAACTCAGCCGGCCCGGAAAAACACCAAGCCGTAGCCCTCCGCAGCGGCGCCGACTTCTCCGCCTTCTACAAATGCAGCTTCGTTGGCTACCAAGACACCCTCTACGTCCACTCCCTCCGCCAGTTCTACCGCGAGTGCGACATCTACGGCACCGTGGACTTCATCTTCGGCAACGCCGCCGCAGTATTCCAAAACTGCAACCTATACGCACGTAAACCGAATGATAATCAGAAGAACATGTTCACCGCACAGGGAAGAGAGGATCCTAACCAAAACACTGGGATATCAATCTTGAACTGCAAGGTTGCAGCTGCTGCAGATTTGATACCTGTGAAGTCGACGTTCAAGAGCTACCTTGGTCGTCCATGGAAACTGTATTCGAGGACGGTTTTTCTGAAGTCTTACATGGAGGATTTGATTGATCCTGCTGGGTGGTTGGAATGGAATGACACGTTTGCGTTGGATACGTTGTATTATGGGGAATATCAGAATCGGGGTCCGGGTTCAAACACTAGTGCAAGAGTTAAGTGGGGTGGTTATAGGGTCATTAATAGTTCAACTGAGGCAAGTCAGTTTACAGTTGGGCAGTTTATACAAGGGAGTGATTGGTTGAACTCCACTGGCATTCCCTTCTACTTTAATTTGAGTTGA 1680 0.4661 MRNLRRAAPILPLVLILTIVFPLLIFKTHFTETKPQEKHLHIQKHIQTAQSTCQGTLYPDLCVSTLTTFPDLTLKSVPQMISSMVNHTVNEVKASSYNCTGLKKQLKNLQPLEQRALDDCLHLFDDTVLELKTTISDLSKATIGSKRRHDLQTLLSGAMTNLYTCLDGFAYSKGNVRRRIEKKLIRISRHVSNALAMFKKVPQVKEKMSENDEVFPEYGKMKNGFPSWVSNKDRKLLQASVSETKFDLVVAKDGSGNFTTIGEAVNVAPNSSTTRFVIHIKAGAYFENVEVIRKKSNLVFVGDGIGKTVVKASRNVVDGWTTFQSATVAVIGDRFIAKGITFENSAGPEKHQAVALRSGADFSAFYKCSFVGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVFQNCNLYARKPNDNQKNMFTAQGREDPNQNTGISILNCKVAAAADLIPVKSTFKSYLGRPWKLYSRTVFLKSYMEDLIDPAGWLEWNDTFALDTLYYGEYQNRGPGSNTSARVKWGGYRVINSSTEASQFTVGQFIQGSDWLNSTGIPFYFNLS* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1186 559 Pfam Pectinesterase 247 543 IPR000070 GO:0030599|GO:0042545
Lja5g1186 559 Gene3D Invertase/pectin methylesterase inhibitor family protein 46 202 IPR035513 -
Lja5g1186 559 TIGRFAM PME_inhib: pectinesterase inhibitor domain 19 200 IPR006501 GO:0004857
Lja5g1186 559 SUPERFAMILY Pectin lyase-like 244 556 IPR011050 -
Lja5g1186 559 CDD PMEI-like_3 51 202 - -
Lja5g1186 559 ProSitePatterns Pectinesterase signature 2. 391 400 IPR033131 -
Lja5g1186 559 Gene3D - 241 558 IPR012334 -
Lja5g1186 559 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 50 201 IPR035513 -
Lja5g1186 559 PANTHER PECTINESTERASE 14 558 - -
Lja5g1186 559 PANTHER PECTINESTERASE 14 558 - -
Lja5g1186 559 SMART PMEI_2 44 197 IPR006501 GO:0004857
Lja5g1186 559 Pfam Plant invertase/pectin methylesterase inhibitor 49 197 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1186 Lja-Chr5 11888667 11894480 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1186 77 558 Carbohydrate Esterase AT4G02320 55.444 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1186 K01051 - gmx:100802881 916.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1186 5 11888667 11894480 Lja5g1186 5 11888667 11894480 ECH
Lja5g1186 5 11888667 11894480 Lja1g0391 1 3426102 3430392 PCT