Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1172 ATGAGTGGAGCGAAGGGGAAGAAGAAGGCGACGAGCTTCGTGATCGATTGCGCGAAGCCGGTGGAGGATAAGATCATGGACATCGCTTCCCTTGAGAAGTTTCTGCAGGAGAGGATTAAGGTCGGCGGCAAAGCTGGTGCGCTCGGCGATTCTGTCACTGTTTCTCGTGAGAAGAGCAAAATCACCGTCACCTCCGATAGCAACTTCTCCAAACGGTATCTGAAGTACTTAACCAAGAAGTACTTGAAAAAGCACAATGTGAGAGATTGGCTACGTGTGATTGCCTCCAACAAGGACCGGAATGTCTACGAGTTGAGATACTTCAACATTGCTGAGAATGAGGGTGAGGAGGAAGACTGA 360 0.4944 MSGAKGKKKATSFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVSREKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEED* 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1172 119 Pfam Ribosomal L22e protein family 8 117 IPR002671 GO:0003735|GO:0005840|GO:0006412
Lja5g1172 119 Gene3D - 1 119 IPR038526 -
Lja5g1172 119 PANTHER 60S RIBOSOMAL PROTEIN L22 2 119 IPR002671 GO:0003735|GO:0005840|GO:0006412
Lja5g1172 119 PANTHER 60S RIBOSOMAL PROTEIN L22-2-LIKE 2 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1172 Lja-Chr5 11785593 11787308 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1172 4 119 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 88.793 2.92e-64 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1172 K02891 - gmx:100500073 217.238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1172 5 11785593 11787308 Lja5g1172 5 11785593 11787308 ECH