Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1164 ATGGCGACTTCTTCAGACTCAGAGAAGAAACAGGTTATGGTGATCGGCATCGACGACAGCGAGCACAGCGTCTACGCCATCAATTGGACTCTCGACCATTTCTTCGCCAAGAACCCTTCCTTCAAGCTTGTTCTTGTTCATGCCAGACCTTCTGCTACTTCCGCTGTTGGCTTCGCTGGCCCAGTGTATGCAGGAGCTGCTGAGGTTTTGCCTATTGTCGATTCCGATTTGAAAAAGATTGCTGCTAGAGTTCTTGAAAACGCTAAGCAAATTTGCATTAAAAACAATATAACTGATGTCGTAGTGGAAGCGGTGGAAGGTGATCCTAGAAATGTTCTTTGCGAAGCCGTGGAGAAGTATCACGCTTCAGTGTTGGTTGTGGGTAGTCATGGTTATGGGGCTCTGAAAAGGGCGGTTTTGGGAAGTGTGAGTGACTATTGTGCTCATCATGCTCACTGCTCTGTGATGATCGTGAAGAAGCCAAAAACCAAACACTAA 498 0.4679 MATSSDSEKKQVMVIGIDDSEHSVYAINWTLDHFFAKNPSFKLVLVHARPSATSAVGFAGPVYAGAAEVLPIVDSDLKKIAARVLENAKQICIKNNITDVVVEAVEGDPRNVLCEAVEKYHASVLVVGSHGYGALKRAVLGSVSDYCAHHAHCSVMIVKKPKTKH* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1164 165 Pfam Universal stress protein family 12 159 IPR006016 -
Lja5g1164 165 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 7 165 - -
Lja5g1164 165 PANTHER - 7 165 - -
Lja5g1164 165 Gene3D HUPs 4 165 IPR014729 -
Lja5g1164 165 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 14 161 - -
Lja5g1164 165 CDD USP_Like 13 158 - -
Lja5g1164 165 PRINTS Universal stress protein signature 10 28 IPR006015 -
Lja5g1164 165 PRINTS Universal stress protein signature 119 131 IPR006015 -
Lja5g1164 165 PRINTS Universal stress protein signature 137 159 IPR006015 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1164 Lja-Chr5 11728405 11731506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1164 26 160 Plant U-box Gene Family AT5G57035 27.397 2.30e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1164 - - cam:101494457 258.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1164 5 11728405 11731506 Lja5g1164 5 11728405 11731506 ECH