Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1163 ATGAAGTTCTGCAAGACATACCAGGAGTACATGCAAGCCCAGGAGCAGAAGAAGCTTCCTGGGGTTGGCTTCAAGAAGCTCAAAAAGATCATGAAAAAGTGTAGGAGAGACTCTCAATCCCTTCATGAATCACTTGGCATCAAATCCTGCCCTCATCAATGCCCAGTGTGCGATGGGACATTTTTCCCGTCCCTTCTCAATGAAATGTCAGAAATATTAGGGTGCTTTAACCACCGTGCCCAGAAATTGCTGCAGCTACATCTTGCTTCTGGCTTCAGAAAGTACATTCTCAAGTTGAAAGGAAAATTCAAAGGGAATCATACTGTCCTTGTTCAAGAAGGAAAAGATCTAGTCACATATGCACTGATTAATGCCATTGCGATACGCAAAATACTGAAGAAATATGATAAGATTCATTATTCCAAGCAAGGGCAATTGTTCAAGTCACAACTCCAGACAATGCATAAGGAAATTCTTCAGAGTCCTTGGCTTTGTGAGCTTATGGCATTACACATCAACTTAAGGGAAACTAAAGTGAAGTCAAAGAAGGCGGCACCTGCATTGCTCGATGGATGTTCCCTGGCATTTACAGATGGAAAACCCTCACTTACTTGTGAGATCTTTGATTCCATCAAAATTGATATTGACCTGACTTGCTCTATTTGTATGGATACAGTATTTGATCCAGTTTCTCTGACTTGCGGCCACATATTCTGCTACAGTTGTGCTTGCTCAGCTGCATCTGTAACTATTGTTGATGGACTTAAGGCAGCAGATCCAAAGGAGAAATGTCCTCTATGCCGAGAGGGAGGAGTTTATGAAGATGCTGTTCACTTAGAAGAATTGAATATTCTGTTAGGCCGAAGCTGCAAGGATTACTGGGAGGAAAGGCTTCAGATGGAGAGGGTAGAGAGGGTTAAGCAAGCGAAGGAGCATTGGGAAATGCAGTGCAGGAACTTCATGGGTGTCTAA 972 0.428 MKFCKTYQEYMQAQEQKKLPGVGFKKLKKIMKKCRRDSQSLHESLGIKSCPHQCPVCDGTFFPSLLNEMSEILGCFNHRAQKLLQLHLASGFRKYILKLKGKFKGNHTVLVQEGKDLVTYALINAIAIRKILKKYDKIHYSKQGQLFKSQLQTMHKEILQSPWLCELMALHINLRETKVKSKKAAPALLDGCSLAFTDGKPSLTCEIFDSIKIDIDLTCSICMDTVFDPVSLTCGHIFCYSCACSAASVTIVDGLKAADPKEKCPLCREGGVYEDAVHLEELNILLGRSCKDYWEERLQMERVERVKQAKEHWEMQCRNFMGV* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1163 323 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 323 IPR033326 -
Lja5g1163 323 SMART ring_2 219 267 IPR001841 -
Lja5g1163 323 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 323 - -
Lja5g1163 323 ProSiteProfiles Zinc finger RING-type profile. 219 268 IPR001841 -
Lja5g1163 323 ProSitePatterns Zinc finger RING-type signature. 234 243 IPR017907 -
Lja5g1163 323 ProSiteProfiles SPX domain profile. 1 149 IPR004331 -
Lja5g1163 323 Pfam Zinc finger, C3HC4 type (RING finger) 216 269 - -
Lja5g1163 323 CDD SPX_BAH1-like 2 145 - -
Lja5g1163 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 208 321 IPR013083 -
Lja5g1163 323 SUPERFAMILY RING/U-box 212 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1163 Lja-Chr5 11719305 11722673 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1163 216 268 C3H Transcription Factor Family AT4G28270 39.655 1.45e-06 46.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1163 5 11719305 11722673 Lja5g1163 5 11719305 11722673 ECH