Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1162 ATGGAGTTTTTGCTATCACTGACCTTGTCTAATAGCTTTTTATTGCTGCAGAGTTTAGAACGTTGTCAACTTAAAGATGCAGTGGCTTCTAAGCCTGGGAAACTTCATTCTTTAGCTGTTGATAATGGCGATAACTGGAGTGTGGGGCAGAGGCAGCTACTTTGTTTAGGGAGGGTCATGCTTAAGCAAAGCAGGCTATTGTTGTTTATGGATGAGGCAACAGCTTCTGTTGATTCTCAAACCGATGCTGTGATCCAGAGGATCATACGAGAAGACTTTGCAGCCCGTACCATCATCAGCATTGCTCATAGGATACCAACAGTCATGGACTGTGATAGAGTTCTTGTTGTAGATGCAGGACGGACAAAAGAATTCAACAAACCCTCCAACTTGCTCCAGAGGCAATCACTCTTTGGGGCATTAGTTCAAGAATATGCCAACCGCTCCACAGGACTATAA 459 0.4401 MEFLLSLTLSNSFLLLQSLERCQLKDAVASKPGKLHSLAVDNGDNWSVGQRQLLCLGRVMLKQSRLLLFMDEATASVDSQTDAVIQRIIREDFAARTIISIAHRIPTVMDCDRVLVVDAGRTKEFNKPSNLLQRQSLFGALVQEYANRSTGL* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1162 152 PANTHER ABC TRANSPORTER C FAMILY MEMBER 4 16 151 - -
Lja5g1162 152 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 16 151 - -
Lja5g1162 152 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 143 IPR027417 -
Lja5g1162 152 Gene3D - 6 150 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1162 Lja-Chr5 11717291 11718332 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1162 28 143 Calmodulin-binding Proteins AT2G36910 24.576 1.74e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1162 - - gmx:100793361 235.343