Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1161 ATGTCTTGGAAGACTTCACTCTCATGTTCTTCACCTTCTTCTGATGCAGCAGCAGCAACTCTACCTCAATGGCTGAGATTCATCTTCCTATCTCCATGTCCACAAAGAGCTCTTTTCTCTGCCATTGATGTTCTGCTCCTGTTGACTCTGTTTGTGTTTGCTGTCACAAAGCTCTATTCACGGTTCATTTCCAATGGCAGCAGAAACAACAACAACCACTCTTCAGAGCTCAACAAGTCTCTTATCAGAAACACAAGAGAGCTTGAAAGAACAAGAACAACAACAATCTGGTTCAAGCTAACTCTAATTTCAACTGTTGTTCTGACTCTATTGTACACAGTTGCTTGTGTTCTGGTCTTCACCAGTTCCACTGAGGCTCCATGGAAGGAACTTGATGGTTTATTCTGGCTGGTTCAGGCAATCACACAACTAGTCCTTGCAATCTTAATCATCCATGAGAAGCGATTTGAAGCTGTTTCTCATCCTCTTTCTCTTCGAATTTACTGGATTGCAAGCTTTGTTGTTGTTTCTCTGTTCACATCTTCTGCAGTCATACGTTTGGTCTCTGTGGAAGGAGGAAAGTACTTCTTCACCTTCATGGTAGATGATACAACCTCTTTAATTTCCCTCCCTCTTTCACTTTTTCTAGTTTTCGTCGCGGTTAAAGGATCCACCGGAGTTAGGCCTAGCCAAGAATCGCAACTTCAAGTAGTACTCGATGATGAGGACACAGAAAGTAAACTGTTGTATGATTCTTCAGCTGAGTCCAAGTCAAATGTTACTGGGTTTGCTTCAGCGTCTGTGGTGTCCAGAGCGTTCTGGATTTGGCTAAACCCGTTGTTGAGCAAAGGCTACAAATCGCCGCTTGTTATCAATGACATTCCATCCCTTTCCCCTCAGCACAGAGCTGAGAGGATGTCAATTCTCTTTGAATCGAAATGGCCTAAATCAGATGAGAAATCGAACCATCCGGTTAGAACCACGCTGGTTCGGTGCTTCTGGAAGGAGATGCTCTTCACTGCTATCCTCGCGGTTATTCGCCTTTGTGTCATGTTTGTTGGGCCACTCCTTATTCAAGATTTTGTGGATTTCACATCAGGGAAAGGTAGCTCTGTGTATGAAGGGTACTATTTAGTGTTGATTCTGCTTTGTGCAAAATTTGTGGAGGTTTTCACCACCCATCATTTCAACTTCAATTCCCAGAAGCTTGGGATGCTTATCAGGAACACCTTGATCACTTCTCTATACAAGAAGGGGTTGAGGCTTTCGTGTTCCGCGAGGCAGGACCATGGTGTTGGGCCTATTGTGAACTACATGGCTGTGGATGCACAGCAACTGTCTGATATGATGCTTCAACTACACGCTGTGTGGATGATGCCGTTTCAGGTTGGAATTGGCTTGTTCTTGCTTTACAATGTTCTTGGCACGTCTGTGATCACCGCGCTGATTGGACTACTCGGTGTTCTCGCATTTATCGTGTCTGCTACAAGGAAGAACAAGCGTTACCAGTTCAGCGCGATGATGAGCCGCGACTCGAGGATGAAGGCTGTGAATGAGATGCTCAATTACATGAGAGTCATCAAGTTCCAGGCATGGGAGGAGCATTTCAATGACAGAATATTGGGTTTCCGTGAGTCTGAGTTTGGGTGGATATCCAAGTTCTTGTACTCAATCTGTGGCAATATTATTGTGCTGTGGAGCACTCCAATGTTGATATCAACTCTCACGTTTGGCACTGCGATTTTGCTCGGTGTTAAGCTTGATGCAGCCACGGTTTTCACCACAACAACTGTGTTTAAGATCCTGCAGGAGCCTATTAGGACATTTCCTCAGTCAATGATATCCCTTTCACAAGCGCTGGTTTCGCTTGAGAGGTTAGATAGGTACATGTCTAGCAGGGAACTTTCAGATGATTCAGTTGAGAGAGAAGAAGGTTGTGGTGGACAAATTGCTGTGGAGGTCAAAGATGGAACTTTTAGCTGGGAAGATGATGGCAGAAAGCAGGACTTGAAGAATGTTAATTTGAAGATTAATAAGGGAGAGCTCACAGCTATTGTTGGGACTGTAGGGTCTGGAAAATCTTCTCTTCTTGCATCAATTCTTGGTGAGATACACAGAATTTCTGGGAAGGTTCAAGTTTGTGGGAGTACTGCTTATGTTGCACAAACAGCTTGGATTCAAAATGGGACCATTGAAGAAAACATTATCTTTGGTTTACCAATGAACAGGCAGAAGTACAATGAAGTTGTGAGGGTTTGTTGCTTGGAGAAAGACCTGGAAATGATGGAGTACGGGGATCAGACAGAGATCGGAGAGCGTGGCATCAACCTAAGTGGGGGGCAGAAGCAGCGTATTCAGCTTGCCAGAGCTGTATACCAGGACTGTGATATATACCTTCTTGATGATGTCTTCAGTGCTGTTGATGCACATACTGGCACTGAAATATTCAAGGAATGTGTGAGGGGAGCTCTAAAAGGCAAGACTATTATTCTTGTAACACATCAAGTAGACTTCCTTCATAATGTGGATCTTATAGTGGTGATGAGGGATGGAAGGATAGTCCAATCAGGGAAGTACAATGATCTATTAGATTCTGGATTGGATTTTAGTGCTCTGGTAGCAGCACATGACACCTCTATGGAACTAGTTGAACAGGGGGCTGCCATGCCTAGTTCTGAAAATTTGAACAGCCCAAAGAAATCTCCCAAAACTGCTTCTAATCACAGAGAAGCCAATGGTGAAAGTAACTCTCTTGACCAGCCCAAGTCTAGCAAGGAAGGTTCTAAACTCATCAAAGAAGAGGAGAGAGAAACTGGGAAAGTTAGTTTGCATATCTATAAACTCTACTGCACTGAGGCTTTTGGGTGGTGGGGCATTACAGGAATCATCCTTCTTTCTGTGTTGTGGCAAGCATCTATGATGGCAAGTGATTATTGGCTGGCGTATGAAACCTCAGAAGAGCGTGCTCAGTTGTTCAATCCTTCTCTCTTTATCTCCATCTATGGAATTATTGCTGTAGTTTCAATTGTTTTTATAATTCTAAGGTCCTACGCCGTTACAATCTTGGGGCTAAAGACAGCACAGCTTTTCTTCACTCAAATTCTTCACAGCATCTTGCATGCTCCTATGTCTTTCTTTGACACTACTCCATCAGGAAGAATTCTAAGCAGGGCTTCCACTGATCAGACCAATGTTGATATCTTTATCCCCTTGTTCTTCAATTTTGTTATCGCCATGTATATCACAGTGATCAGCATCTTCATAATCACATGTCAAAATTCTTGGCCAACAACTTTCTTGTTAGTTCCACTTGTTTGGTTGAACATTTGGTATCGGGGTTATTATCTTGCTTCGTCTCGTGAACTAACTCGCTTGGATTCAATTACAAAAGCACCTGTCATTCATCATTTCTCTGAAAGCATATCCGGTGTCATGACAATCCGAGCATTCCAAAAGCAGAAGGAATTTAGTGTAGAAAATGTTAAACGGGTGAATGATAATTTGCGGATGGATTTCCACAATTTCAGTTCCAATGCGTGGTTGGGTTTCCGCTTAGAATTGCTTGGAAGCTTAGTTTTCTGCATTTCTGCTATGTTCATGATCCTGTTGCCCAGCAGTATCATAAAACCAGAAAATGTTGGGTTATCTCTCTCTTATGGAATGTCATTAAATTCTGTGATGTTCTGGGCTATATACATGAGCTGTTTCATTGAAAACAAAATGGTATCTGTTGAGAGGATAAAACAGTTCACAACTATTCCATCAGAAGCATCCTGGAATATGAAGGATCGCCTTCCTCCTCCAAATTGGCCCGGTCAAGGCCATGTTGATATCAAAGACTTGCAGGTCCGATATCGTCCAAACACTCCTTTGGTTCTTAAGGGCATTACTCTAAGCATTAGTGGAGGAGAAAAGGTTGGTGTTGTTGGTCGAACAGGGAGCGGAAAATCAACTCTAATTCAAGTTTTCTTTAGGCTGGTGGAACCTACAGGAGGGAAAATAATCATTGATGGCATTGATATTTCTGCCTTAGGACTTCATGATCTTAGATCTCGGTTTGGTATCATCCCTCAGGAGCCTGTTCTTTTTGAAGGAACTGTTAGAAGTAACATTGATCCAACTGCACAATATACAGATGATGACATATGGAAGAGTTTAGAACGTTGTCAACTTAAAGATGCAGTGGTTTCTAAGCCTGGGAAACTCGATTCATTAGTGGTTGATAATGGCGATAACTGGAGTGTGGGGCAGAGGCAGTTGCTTTGTTTAGGGAGGGTCATGCTTAAGCAAAGCAGGCTACTGTTTATGGATGAGGCAACAGCTTCTGTTGATTCTCAAACCGATGCTGTGATCCAGAGGATCATACGAGAAGACTTTGCAGCCCGTACCATCATCAGCATTGCTCATAGGATACCAACAGTCATGGACTGTGATAGAGTTCTTGTTGTAGATGCAGGACGGGCGAAAGAATTCGACAGACCCTCCAACTTGCTCCAGAGGCAATCACTCTTTGGGGCATTAGTTCAAGAATATGCCAACCGCTCCACAGGACTATAA 4557 0.4314 MSWKTSLSCSSPSSDAAAATLPQWLRFIFLSPCPQRALFSAIDVLLLLTLFVFAVTKLYSRFISNGSRNNNNHSSELNKSLIRNTRELERTRTTTIWFKLTLISTVVLTLLYTVACVLVFTSSTEAPWKELDGLFWLVQAITQLVLAILIIHEKRFEAVSHPLSLRIYWIASFVVVSLFTSSAVIRLVSVEGGKYFFTFMVDDTTSLISLPLSLFLVFVAVKGSTGVRPSQESQLQVVLDDEDTESKLLYDSSAESKSNVTGFASASVVSRAFWIWLNPLLSKGYKSPLVINDIPSLSPQHRAERMSILFESKWPKSDEKSNHPVRTTLVRCFWKEMLFTAILAVIRLCVMFVGPLLIQDFVDFTSGKGSSVYEGYYLVLILLCAKFVEVFTTHHFNFNSQKLGMLIRNTLITSLYKKGLRLSCSARQDHGVGPIVNYMAVDAQQLSDMMLQLHAVWMMPFQVGIGLFLLYNVLGTSVITALIGLLGVLAFIVSATRKNKRYQFSAMMSRDSRMKAVNEMLNYMRVIKFQAWEEHFNDRILGFRESEFGWISKFLYSICGNIIVLWSTPMLISTLTFGTAILLGVKLDAATVFTTTTVFKILQEPIRTFPQSMISLSQALVSLERLDRYMSSRELSDDSVEREEGCGGQIAVEVKDGTFSWEDDGRKQDLKNVNLKINKGELTAIVGTVGSGKSSLLASILGEIHRISGKVQVCGSTAYVAQTAWIQNGTIEENIIFGLPMNRQKYNEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGTEIFKECVRGALKGKTIILVTHQVDFLHNVDLIVVMRDGRIVQSGKYNDLLDSGLDFSALVAAHDTSMELVEQGAAMPSSENLNSPKKSPKTASNHREANGESNSLDQPKSSKEGSKLIKEEERETGKVSLHIYKLYCTEAFGWWGITGIILLSVLWQASMMASDYWLAYETSEERAQLFNPSLFISIYGIIAVVSIVFIILRSYAVTILGLKTAQLFFTQILHSILHAPMSFFDTTPSGRILSRASTDQTNVDIFIPLFFNFVIAMYITVISIFIITCQNSWPTTFLLVPLVWLNIWYRGYYLASSRELTRLDSITKAPVIHHFSESISGVMTIRAFQKQKEFSVENVKRVNDNLRMDFHNFSSNAWLGFRLELLGSLVFCISAMFMILLPSSIIKPENVGLSLSYGMSLNSVMFWAIYMSCFIENKMVSVERIKQFTTIPSEASWNMKDRLPPPNWPGQGHVDIKDLQVRYRPNTPLVLKGITLSISGGEKVGVVGRTGSGKSTLIQVFFRLVEPTGGKIIIDGIDISALGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTAQYTDDDIWKSLERCQLKDAVVSKPGKLDSLVVDNGDNWSVGQRQLLCLGRVMLKQSRLLFMDEATASVDSQTDAVIQRIIREDFAARTIISIAHRIPTVMDCDRVLVVDAGRAKEFDRPSNLLQRQSLFGALVQEYANRSTGL* 1519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1161 1518 Gene3D ABC transporter type 1, transmembrane domain 325 634 IPR036640 GO:0005524|GO:0016021
Lja5g1161 1518 Gene3D ABC transporter type 1, transmembrane domain 922 1257 IPR036640 GO:0005524|GO:0016021
Lja5g1161 1518 MobiDBLite consensus disorder prediction 886 933 - -
Lja5g1161 1518 ProSitePatterns ABC transporters family signature. 777 791 IPR017871 GO:0005524
Lja5g1161 1518 SMART AAA_5 1302 1486 IPR003593 -
Lja5g1161 1518 SMART AAA_5 679 852 IPR003593 -
Lja5g1161 1518 Pfam ABC transporter 1293 1441 IPR003439 GO:0005524
Lja5g1161 1518 CDD ABCC_MRP_domain2 1274 1494 - -
Lja5g1161 1518 CDD ABCC_MRP_domain1 652 852 - -
Lja5g1161 1518 Gene3D - 650 881 IPR027417 -
Lja5g1161 1518 SUPERFAMILY ABC transporter transmembrane region 329 631 IPR036640 GO:0005524|GO:0016021
Lja5g1161 1518 MobiDBLite consensus disorder prediction 889 924 - -
Lja5g1161 1518 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1276 1510 IPR003439 GO:0005524
Lja5g1161 1518 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 961 1239 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja5g1161 1518 CDD ABC_6TM_ABCC_D2 959 1251 IPR044726 GO:0140359
Lja5g1161 1518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 650 873 IPR027417 -
Lja5g1161 1518 CDD ABC_6TM_ABCC_D1 339 626 IPR044746 GO:0140359
Lja5g1161 1518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1268 1509 IPR027417 -
Lja5g1161 1518 SUPERFAMILY ABC transporter transmembrane region 956 1256 IPR036640 GO:0005524|GO:0016021
Lja5g1161 1518 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 90 1517 - -
Lja5g1161 1518 Pfam ABC transporter 670 803 IPR003439 GO:0005524
Lja5g1161 1518 Pfam ABC transporter transmembrane region 338 605 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja5g1161 1518 Pfam ABC transporter transmembrane region 962 1217 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja5g1161 1518 Gene3D - 1259 1509 IPR027417 -
Lja5g1161 1518 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 652 875 IPR003439 GO:0005524
Lja5g1161 1518 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 338 618 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja5g1161 1518 PANTHER ABC TRANSPORTER C FAMILY MEMBER 4 90 1517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1161 Lja-Chr5 11702727 11709434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1161 608 868 Calmodulin-binding Proteins AT2G36910 30.935 6.87e-26 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1161 - K05666 gmx:100793361 2528.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1161 5 11702727 11709434 Lja5g1161 5 11702727 11709434 ECH