Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1157 ATGGTTGAAACCAGACGCAGTTCCTCTTCCTCCAAGCGCTCTCTCCCTTCACCTCCATCCTCTTCTCCTACCAATTCCAAACGATCCAAGGTCTCAGAGGATGCATCATCCACTACCCCGCCTGCCCCTGTCGATGAATCTGGTGAACCGGTGCTGCGGCTGTCTGATCTGACTGAAACGCCGTCGCTGAAGGCGGCGGATGCGGTGGTGCCGGTGGCTGATGAGGAGTCTCCTTCTGTGACGGTGCAAGGTGAGGATTCGGTGCCGCCTCAGTCTCCAGGTGAATCTGCGGAGAAATCAAAGGTGGCTGACATGGCGGTGGAGCCTGGTCGGTTGAAGAAACGCAGCCCGAAATCGAGCCCTGGGGCTGCGTGGGGAAAGCTCATTTCTCAGTCTTCTTCTCAGAATCCTCATCTAGTCATGTGTGGTCCTGTCTACACTGTTGGTCAAGGTCGCCAATGTAATTTATCGCTTAAAGATCCCACCGTTAGCACTGTTTTGTGCAAGTTGAGCCACATTGAGCGTGAAGGTTCATCTGTTGCACTGCTGGAAATAACAGGGGGTAAAGGCACCGTTCAAGTTAATGGAAAGACTTATCGAAAGAATGCCCGTCTGATTTTAAGTGGGGGTGATGAGGTTGTCTTCGCTTCTTCTGGCAAGCATGCTTATATTTTTCAGCAGCTCACATGTAATAGTATTGCTACTGCTAGTGAACCTTCTCCTGTGAGTATTTTAGAAGCCCAAAGTTCTCCAGTTAATGGAACGCAGGTTGAAGCTAGATCTGGAGATGCGTCAGCTGTTGCTGGAGCTCCAATGTTGGCCTCTTTAGCTAATCTTGAAGATTTATCTCTCATTCCACCTCCTGTTAAAGCTGGCAAGAATGTGCAACAGAACAATGAAGTTTCATCACTACCTTCTGGCCATGAAGATGATATTCCTGGCATTGAAATGAAGGATATAATCAGTAGTGATGAACTGGCTGGAGATTTTTCTGCTGAGAAAAATGTTGCATCATCTACCACCGATAATGAAAATTCTAAGCTTGATGCTATGGAAGCCGATGATGTCAATTTGGATGCAGATGTTGGGAAGATTACTGCTTCTGCTACCTTCAGCTTGAGGCCATTACTGTGCATGTTTGCTGGCCCATGTCCTGAATTTGATTTAAGTGCTAGCCTTTCCAAGATAATGGAAGAGCAAAGAGAGTTAAGAGAACTCTCTAAAGATGTTGATACGCCAACATTGGTCTCAACTAGGCAGCAAGCTTTTAGGGACAGTTTACAACAGCGAATTATTAATCCTGAGAATATTGATGTCTCATTTGAAAGTTTTCCATATTATCTAAGTGATACAACAAAGGATGTTTTGATTGCTTCTACTTATATTCATTTGAAGTGCAATGGCTTTGGAAAATTTGTTTCAGACCTGCCATCAGTGTGTCCACAGATACTATTATCTGGTCCTACAGGTTCGGAAATATATCAGGAAACTTTGTCCAAGGCACTTGCAAAGCATTTTGGTGCAAGGCTGCTGATTTTGGATTCTCTTTCACTGCCTGGTACATCACCATCAAAGGAAATTGATTCCGCTAAAGAAAGTTCAAGGCCTGACAGGCCGTATGTGTTCACTAAGAGAAGTACCCATACTGCCACAGTACAGCATAAGAGACCAGCTTCTAGTGTTAATGCCGAAATCATAGGTGGATCCACATTAACTTCCCAGGCTATGCTGAAGCAAGAGGTTTCTACTGCATCATCAAAAGGCAGTACTCTTAAAACTGGCGATCGGGTAAAATTTGTTGGGAACGTTCCTTCTGCTGTCTCAACACTACAAAATTATCCTTCAAGGGGACCCAGCTATGGCTCCCGGGGTAAGGTTCTGCTTGCTTTTGAAGATAACGGGTCTTCGAAAATTGGGGTTAGATTTGATAAGTCGATTTCAGACGGTAATGATCTTGGAGGCCTTTGCGAAGATGATCGTGGCTTCTTTTGTTCTGCAAATCATTTACAACTTGTAGATATTTCTGGAGGAGATGAATGTGACAAAATTGCGATCAATGAAATCTTTGAGATTGCCTCTAATATGAGTAAAAGTGGATCGCTAGTGTTGTTCATTAAAGATATAGAGAAGGCAATTGTTGGGAACTCAGAAGTTTTGAAAAGTAAATTTGAAAGCTTGCCGCAGAATGTTGTAGTAATTGGCTCATACATCCAGCAAGACAATCGTAAGGAGAAGACCCAGTCTGGCAGTCTTCTGTTCACAAAGTTTGGGAGCAATCAGACGGCTCTACTTGATCTTGCTTTTCCGGATAACTTCAGTAGACTACATGATAAGAGCAAAGAAACTTCCAAAGCAATGAAGCAACTTAATCGCCTTTTCCCAAACAAATTGACAATACAATTGCCACAGGATGAGGCTTTACTCTCAGATTGGAAGCAGAAATTAGAACGCGATGTTGAAACAATGAGAGCTCAGTCTAACATTGTCAATATTCGCTTGGTTCTCAACAGAATTGGACTGGGTTGCCCTGACCTTGAGACTCTTTGTATCAAAGATCAAACTCTAACAACTGAAAATGTGGAGAAGATCATTGGCTGGGCTTTAAGTTACCATTTTATGCATTCATCTGAAGTTTCTATGAAGGATTCTAAGTTGGTGATATCTGCGGAAAGCATTAATCATGGGTTTAACATTCTACAAGGTGCTCAAAATGAAAACAAGAACTTAAAAAAATCTTTGAAGGATGTGGTGACTGAAAATGAATTTGAGAAAAAACTGCTTGGAGATGTTATTCCACCAACTGATATCGGGGTCAAATTTGAAGACATTGGAGCTTTAGAAAATGTAAAGGACACCTTAAAGGAACTGGTCATGCTTCCCCTTCAGAGACCTGAATTGTTTTGCAAAGGACAGCTGACTAAGCCTTGCAAGGGAATATTGCTTTTTGGGCCTCCTGGCACGGGAAAAACAATGCTTGCAAAGGCTGTAGCTACTGAAGCTGGAGCAAATTTTATAAACATTTCGACGTCCAGCATTACTTCAAAGTGGTTTGGTGAAGGGGAGAAATATGTCAAAGCAGTCTTTTCTCTGGCAAGCAAAATTGCTCCCAGCGTTATTTTTATTGATGAGGTTGATAGTATGTTAGGGAGACGAGAAAATCCGGGTGAGCATGAAGCTATGCGTAAAATGAAGAATGAGTTTATGGTTAACTGGGATGGTCTGCGTACCAAAGATAAAGAGCGTGTACTTGTTCTCGCTGCAACAAACAGACCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCGCGAAGGTTGATGGTTAACTTGCCAGATGCAACAAACAGAGAAAAAATTATGAGAGTCATTTTATCAAAAGAAGAGTTGGCACCTGATGTTGATTTGGAAGCTATAGCAAATATGACTGATGGATATTCAGGAAGTGACCTAAAGAATCTTTGTGTCACAGCAGCTCACTGTCCAATAAGAGAGGTTTTGGAGAAGGAAAAGAAGGAGAGAAGCTTGGCATTGGCTGAGAACAAACCGTTACCTGGATTGTGTAGCAGTGCTGACATTCGGGCCTTGAAGATGGAAGATTTTAGATATGCACATGAGCAGGTGGGTGCAAGCGTGTCGTCCGACTCAACAAATATGAATGAGCTTCAACAGTGGAATGACCTCTATGGAGAAGGTGGATCGAGGAAAGTGAGATCTTTGAGCTACTTCATGTAA 3732 0.429 MVETRRSSSSSKRSLPSPPSSSPTNSKRSKVSEDASSTTPPAPVDESGEPVLRLSDLTETPSLKAADAVVPVADEESPSVTVQGEDSVPPQSPGESAEKSKVADMAVEPGRLKKRSPKSSPGAAWGKLISQSSSQNPHLVMCGPVYTVGQGRQCNLSLKDPTVSTVLCKLSHIEREGSSVALLEITGGKGTVQVNGKTYRKNARLILSGGDEVVFASSGKHAYIFQQLTCNSIATASEPSPVSILEAQSSPVNGTQVEARSGDASAVAGAPMLASLANLEDLSLIPPPVKAGKNVQQNNEVSSLPSGHEDDIPGIEMKDIISSDELAGDFSAEKNVASSTTDNENSKLDAMEADDVNLDADVGKITASATFSLRPLLCMFAGPCPEFDLSASLSKIMEEQRELRELSKDVDTPTLVSTRQQAFRDSLQQRIINPENIDVSFESFPYYLSDTTKDVLIASTYIHLKCNGFGKFVSDLPSVCPQILLSGPTGSEIYQETLSKALAKHFGARLLILDSLSLPGTSPSKEIDSAKESSRPDRPYVFTKRSTHTATVQHKRPASSVNAEIIGGSTLTSQAMLKQEVSTASSKGSTLKTGDRVKFVGNVPSAVSTLQNYPSRGPSYGSRGKVLLAFEDNGSSKIGVRFDKSISDGNDLGGLCEDDRGFFCSANHLQLVDISGGDECDKIAINEIFEIASNMSKSGSLVLFIKDIEKAIVGNSEVLKSKFESLPQNVVVIGSYIQQDNRKEKTQSGSLLFTKFGSNQTALLDLAFPDNFSRLHDKSKETSKAMKQLNRLFPNKLTIQLPQDEALLSDWKQKLERDVETMRAQSNIVNIRLVLNRIGLGCPDLETLCIKDQTLTTENVEKIIGWALSYHFMHSSEVSMKDSKLVISAESINHGFNILQGAQNENKNLKKSLKDVVTENEFEKKLLGDVIPPTDIGVKFEDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISTSSITSKWFGEGEKYVKAVFSLASKIAPSVIFIDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDATNREKIMRVILSKEELAPDVDLEAIANMTDGYSGSDLKNLCVTAAHCPIREVLEKEKKERSLALAENKPLPGLCSSADIRALKMEDFRYAHEQVGASVSSDSTNMNELQQWNDLYGEGGSRKVRSLSYFM* 1244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1157 1243 CDD FHA 143 226 IPR000253 GO:0005515
Lja5g1157 1243 MobiDBLite consensus disorder prediction 101 115 - -
Lja5g1157 1243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 938 1214 IPR027417 -
Lja5g1157 1243 Gene3D - 1111 1205 - -
Lja5g1157 1243 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 1243 - -
Lja5g1157 1243 MobiDBLite consensus disorder prediction 1 43 - -
Lja5g1157 1243 Pfam AAA+ lid domain 1132 1168 IPR041569 -
Lja5g1157 1243 Gene3D - 937 1216 IPR027417 -
Lja5g1157 1243 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 1243 - -
Lja5g1157 1243 Coils Coil 899 919 - -
Lja5g1157 1243 MobiDBLite consensus disorder prediction 80 94 - -
Lja5g1157 1243 Pfam ATPase family associated with various cellular activities (AAA) 979 1108 IPR003959 GO:0005524|GO:0016887
Lja5g1157 1243 Coils Coil 389 409 - -
Lja5g1157 1243 SUPERFAMILY SMAD/FHA domain 125 218 IPR008984 GO:0005515
Lja5g1157 1243 SMART AAA_5 975 1112 IPR003593 -
Lja5g1157 1243 CDD AAA 977 1110 - -
Lja5g1157 1243 Gene3D - 124 234 - -
Lja5g1157 1243 MobiDBLite consensus disorder prediction 1 130 - -
Lja5g1157 1243 ProSitePatterns AAA-protein family signature. 1082 1101 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1157 Lja-Chr5 11668865 11679273 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1157 974 1179 Calmodulin-binding Proteins AT3G56690 37.143 1.07e-32 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1157 - - gmx:100801477 1881.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1157 5 11668865 11679273 Lja5g1157 5 11668865 11679273 ECH