Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1155 ATGGTTGAAACCAGACGCGGCTCCTCTTCTTCCAAGCGCCCTCTCTCCTCGCCTCCTCCTCCTCCCTCCGGCGTCAAGCGATCCAAGGTCTCCGAGGATGCATCATCGAGTACTCTGCCTTCCCCTGTCAACGAATCTGGCGAACCGGAGCTTCGGGGTTCTGATCTGCCTGATACGCCGTCGTTGAAGGCTGGGGATGCGGCGGTTCCCGATGAGTCTCCGTCTGTGCCCGTCGTACAAGGCGAGGATTCGGGGTCCCCTCAGTCTCCAGGTGAAACTGCGGAGAAATCGAAAGGCGGCGCGCCGCCTGGTCGGATGAAGAAACGGACCATGAAACCAACCCCCAAGGATGCGTGGGGAAAGCTCATCTCTCAGTGTCCTCCGAACCCTCACCTGTCCATGAGTGATGCTACCTTCACTGTTGGTCAAGGTCGTCAGTGTAATTTACTACTCAAAGATTCCAATGTTGGTAGTGTTTTGTGCAAGTTGAGTCACATAGAGCGTGGAGGTTCCTCTGTTGCCTTACTGGAAATCACAGGGAGTAAAGGTGCTGTTCAAGTTAATGGAAAAACATACCGAAGGAATGCCCGCCTGATTTTAAGTGGAGGTGATGAGGTGGTCTTTGGTTCTTCTGGCAAGCATTCTTATATCTTTCAGCAACTCAAAAATAATATCAGCGCTGCTGGTATGCCTTCTGTGAGTATTTTAGAAGCCCAAAGTGCTCCAATAAATGGAATCCATATTGAAGCTAGATCTGGAGACGCGTCAGCTGTTGCTGGAGCTTCAATATTGGCCTCTTTATCTGATCTTCATAAAGATTTATCTACCGTTCCTCCTCCTGTTAAAACTGGCAAGAATGTGCAACCGAACGCTGATGTTTCATCATTAACTGCTGGCCATGAGGATGATATTCCAGACATTGAAATGAAGGATACCACCAATAATGATGAACTAGCTGGAGATTTACCTACTGAGAAGACTGTTCTTGCATCCTCTACCACCGATAATGAAAACCCTAAGCCTGATGGTGTGGAAGTTGATGCCAATTTGGTTGCAGATGTTGGGAAGATGACTGATGCTACTTGCGAATTGAGGCCATTGCTGCGCATGCTTGCTGGCTCATGTCCTGAATTTGATTTAAGTGGTAGCATTTCCAAGATATTGGAAGAGCGGAGGGAATTAAGAGAACTACTTAAAGATGTTGATACCCCAACCCTATTGGCCTCAACCAGGCGACAAGCGTTCAAGGACAGTTTACAGCAGAGAATACTCAATGCTGAAGATATTGATGTCTCATTTGAAAGTTTTCCATATTACCTAAGTGATACAACAAAGAATGTTTTGATTACTTCAATGTATATTCATTTGAAGTGCAATGGCTTTGGGAAATATGCTTCAGACCTCTCATCTGTGTCTCCTCGGATATTGTTATCTGGTCCTGCAGGTTCGGATATATATCAGGAGACTTTGTCCAAGGCACTTGCAAAGCATTTTGGTGCCAAGCTATTAATTGTGGATTCTCTTTCTCTGCCTGGTGGAACACCATCAAAAGATGTTGATTCTACTAAAGAAAGTTCAAGGCCAGAAAGACCATCTGTTTTCGCAAAGAGAAGTTCACAGGCTGGTACATTACATCATAAGAAGCCAGCTTCTAGTGTTGATGCTGAAATTGTAGGTGGATCCACAGTCAGTTCTCAGGCTACATTGAAGCAAGAGGTTTCTACTGCCTCATCAAAAGGCACTACTCTTAAAACAGGCGATCGAGTAAAATTTGTGGGTAACTTTCCGTCTACTGTGTCATCGCTACAAAATTATCCTTCAAGGGGACCGAGCTATGGCTCTCGTGGCAAAGTTCTCCTCGCTTTTGAAGGTAACGGGTCTTCAAAAATTGGGGTTAGGTTTGATAAATCAATTCCAGATGGCAATGACCTTGGAGGCCTTTGCGAAGATGATCGTGGGTTCTTTTGTTCTGCAAATCATTTACTACGGGTGGATGGTTCTGGAGGAGATGACTTCAATAAAGTTGCAATTAATGAAATCTTTGAGGTTGCCTCCAATCAAAGCAAAAACGGTTCACTAGTGTTATTCATCAAAGATATAGAGAAGGCAGTGGTTGGGAACTCAGAAGTTTTGAAAAGTAAATTAGAAAGCTTGCCAAAGAATGTTGTGGTAATTGGCTCACATAGCCAGCTGGACAGTCGTAAAGAAAAGACTCAGCCAGGTGGCCTTTTGTTTACAAAATTTGGCGGCAATCAGACAGCACTTCTTGATCTTGCTTTTCCGGATAACTTTAGTAGACTACATGATAGGAGCAAAGAAACCCCCAAAGTAATGAAGCAACTTAGCCGCCTTTTCCCAAACAAAGTTACAATACAGCTTCCTCAGGAAGAGGCTTTACTTTCTGATTGGAAGCAGCAGCTAGAACGTGACATTGAAACTATGAAAGCACAGGCCAACGTTGTCAGCATTAGATTAGTTCTGAACAGAATTGGATTGGATTGCCCTGACCTTGAGACAATTTGCTTGAAAGATCAAACCCTAACCACTGAAAATGTTGAGAAGATCATTGGCTGGGCTATAAGTTTCCATTCCATGCATTCATCTGAAGCTTCAATGAAAGACTCGAAGCCTCTGATATCTGCAGAAAGCATTAAATATGGGCTTGACATGCTACAGGCCATTCAAAATGAGAACAAGAGCTTGAAAAAATCTCTGAAGGACGTGGTTACTGAGAATGAATTTGAGAAAAAATTGCTTGGTGATGTTATTCCACCAGCTGATATTGGTGTTACATTTGATGATATTGGAGCTTTAGAAAAAGTAAAGGACACCCTAAAGGAATTGGTCATGCTTCCTCTTAAGAGGCCTGAATTGTTTTGCAAAGGACAGCTGACTAAGCCTTGCAAGGGAATATTGCTCTTTGGGCCTCCTGGCACAGGCAAAACAATGCTTGCAAAGGCTGTAGCAACTGAAGCAGGAGCGAATTTCATTAATATTTCTATGTCCAGCATTACTTCCAAGTGGTTCGGTGAAGGAGAAAAATATGTCAAAGCAGTCTTCTCTCTAGCCAGCAAAATTTCTCCAAGTGTTATCTTTGTTGATGAGGTTGATAGCATGTTAGGGAGACGTGAAAATCCTGGTGAGCATGAGGCTATGCGTAAAATGAAGAATGAGTTTATGGTTAATTGGGATGGTCTGCGTACAAAAGATAAAGAGCGTGTACTTGTTCTTGCTGCTACGAACAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCGCGAAGATTGATGGTTAATTTGCCAGATGCTCCAAACAGAGAAAAAATTCTTAGAGTCATTTTAGAAAAAGAAGATTTGGCACCTGATGTTGATTTGGAAGCAGTGGCAAATATGACAGATGGATATTCAGGGAGTGACCTAAAGAATCTGTGTGTCACAGCAGCTCACTGCCCAATAAGAGAAATTTTGGAGAAGGAAAAGAAGGAGAGAAGCTTAGCATTGGCCGAGGACAAACCTTTACCTGGATTGTGTAGCAGTGCTGACATTCGTCCCTTAAAGATGGAGGACTTTAGATACGCACAGGAGCAGGTCTGTGCGAGCGTGTCAACAGATACAACAAATATGAATGAGCTACAACAATGGAATGACCTATATGGAGAAGGTGGATCGAGAAAAGTGAGATCTTTGAGCTACTTCATGTAA 3708 0.4361 MVETRRGSSSSKRPLSSPPPPPSGVKRSKVSEDASSSTLPSPVNESGEPELRGSDLPDTPSLKAGDAAVPDESPSVPVVQGEDSGSPQSPGETAEKSKGGAPPGRMKKRTMKPTPKDAWGKLISQCPPNPHLSMSDATFTVGQGRQCNLLLKDSNVGSVLCKLSHIERGGSSVALLEITGSKGAVQVNGKTYRRNARLILSGGDEVVFGSSGKHSYIFQQLKNNISAAGMPSVSILEAQSAPINGIHIEARSGDASAVAGASILASLSDLHKDLSTVPPPVKTGKNVQPNADVSSLTAGHEDDIPDIEMKDTTNNDELAGDLPTEKTVLASSTTDNENPKPDGVEVDANLVADVGKMTDATCELRPLLRMLAGSCPEFDLSGSISKILEERRELRELLKDVDTPTLLASTRRQAFKDSLQQRILNAEDIDVSFESFPYYLSDTTKNVLITSMYIHLKCNGFGKYASDLSSVSPRILLSGPAGSDIYQETLSKALAKHFGAKLLIVDSLSLPGGTPSKDVDSTKESSRPERPSVFAKRSSQAGTLHHKKPASSVDAEIVGGSTVSSQATLKQEVSTASSKGTTLKTGDRVKFVGNFPSTVSSLQNYPSRGPSYGSRGKVLLAFEGNGSSKIGVRFDKSIPDGNDLGGLCEDDRGFFCSANHLLRVDGSGGDDFNKVAINEIFEVASNQSKNGSLVLFIKDIEKAVVGNSEVLKSKLESLPKNVVVIGSHSQLDSRKEKTQPGGLLFTKFGGNQTALLDLAFPDNFSRLHDRSKETPKVMKQLSRLFPNKVTIQLPQEEALLSDWKQQLERDIETMKAQANVVSIRLVLNRIGLDCPDLETICLKDQTLTTENVEKIIGWAISFHSMHSSEASMKDSKPLISAESIKYGLDMLQAIQNENKSLKKSLKDVVTENEFEKKLLGDVIPPADIGVTFDDIGALEKVKDTLKELVMLPLKRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKISPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNREKILRVILEKEDLAPDVDLEAVANMTDGYSGSDLKNLCVTAAHCPIREILEKEKKERSLALAEDKPLPGLCSSADIRPLKMEDFRYAQEQVCASVSTDTTNMNELQQWNDLYGEGGSRKVRSLSYFM* 1236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1155 1235 Gene3D - 929 1208 IPR027417 -
Lja5g1155 1235 CDD AAA 969 1102 - -
Lja5g1155 1235 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 1235 - -
Lja5g1155 1235 Coils Coil 804 824 - -
Lja5g1155 1235 MobiDBLite consensus disorder prediction 29 44 - -
Lja5g1155 1235 Coils Coil 891 911 - -
Lja5g1155 1235 Gene3D - 118 227 - -
Lja5g1155 1235 Pfam ATPase family associated with various cellular activities (AAA) 971 1100 IPR003959 GO:0005524|GO:0016887
Lja5g1155 1235 MobiDBLite consensus disorder prediction 514 553 - -
Lja5g1155 1235 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 1235 - -
Lja5g1155 1235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 930 1210 IPR027417 -
Lja5g1155 1235 MobiDBLite consensus disorder prediction 79 93 - -
Lja5g1155 1235 MobiDBLite consensus disorder prediction 299 315 - -
Lja5g1155 1235 MobiDBLite consensus disorder prediction 1 117 - -
Lja5g1155 1235 CDD FHA 135 219 IPR000253 GO:0005515
Lja5g1155 1235 ProSitePatterns AAA-protein family signature. 1074 1093 IPR003960 GO:0005524|GO:0016887
Lja5g1155 1235 MobiDBLite consensus disorder prediction 281 295 - -
Lja5g1155 1235 MobiDBLite consensus disorder prediction 277 323 - -
Lja5g1155 1235 SMART AAA_5 967 1104 IPR003593 -
Lja5g1155 1235 Gene3D - 1103 1197 - -
Lja5g1155 1235 SUPERFAMILY SMAD/FHA domain 118 211 IPR008984 GO:0005515
Lja5g1155 1235 Pfam AAA+ lid domain 1124 1160 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1155 Lja-Chr5 11640298 11657710 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1155 930 1215 Calmodulin-binding Proteins AT3G56690 37.113 9.04e-42 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1155 - - gmx:100801477 1954.1