Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1147 ATGGGTGAGAGAGAAGCAGCCTTTAATATTAACTACAATTTCAGTGACAACACTGCTGAAGAAGATGGAATCATCATAAGAGAGCAAGATCGATTGCTTCCAATAGCAAACGTGGGGAGGATCATGAAGCAGATCCTTCCTTCAAATGCCAAAATCTCCAAAGAAGCTAAGGAAACCATGCAAGAGTGTGTCTCCGAGTTTGTGAGCTTTGTGACTGGGGAAGCTTCTGACAAGTGTCACAAGGAGAAGCGCAAGACGGTGAATGGTGATGATGTTTGCTGGGCCTTGGGAACACTAGGGTTTGATGACTATGCTGATCCACTGAAAAGGTATTTGAACAAGTACAGGGAATTGGATGGAGGGAGAGCAAATCAGAATAAGGGTAACAACAGTGGTGATGAGAACAATATTGAAGGATATCATAATTGTGAAGGTAAGCCACCACCAGCCCCTGGTTCTTCTAGTAACCCAGTAGCCATGCTCAAACTGAATGATAGGAGCAGTGTCCCACAGTCCAGGGGATTTTGA 528 0.4451 MGEREAAFNINYNFSDNTAEEDGIIIREQDRLLPIANVGRIMKQILPSNAKISKEAKETMQECVSEFVSFVTGEASDKCHKEKRKTVNGDDVCWALGTLGFDDYADPLKRYLNKYRELDGGRANQNKGNNSGDENNIEGYHNCEGKPPPAPGSSSNPVAMLKLNDRSSVPQSRGF* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1147 175 MobiDBLite consensus disorder prediction 123 137 - -
Lja5g1147 175 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 13 136 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lja5g1147 175 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 96 IPR003958 -
Lja5g1147 175 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 13 136 - -
Lja5g1147 175 MobiDBLite consensus disorder prediction 157 175 - -
Lja5g1147 175 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Lja5g1147 175 PRINTS CCAAT-binding transcription factor subunit A signature 60 78 - -
Lja5g1147 175 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Lja5g1147 175 SUPERFAMILY Histone-fold 29 135 IPR009072 GO:0046982
Lja5g1147 175 Gene3D Histone, subunit A 25 143 IPR009072 GO:0046982
Lja5g1147 175 MobiDBLite consensus disorder prediction 120 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1147 Lja-Chr5 11563547 11564550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1147 11 126 CCAAT-HAP3 Transcription Factor Family AT2G47810 65.414 1.99e-60 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lja5g1147 CBFD_NFYB_HMF 4.2e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1147 K08065 - gmx:100817274 213.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1147 5 11563547 11564550 Lja5g1147 5 11563547 11564550 ECH
Lja1g0885 1 8674765 8678120 Lja5g1147 5 11563547 11564550 PCT