Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1146 ATGTCAAATGTTTCAGGTGATGAAAGAAGTTTCTCCTCAGCAAACACTGGAGAAGAAGTTCTTCAATTAAAGGAGCAGCAACTACAACATCAAGATCACCCCCATGGCTCAATTTCAGAACCTTCTGATGCTTGCAACAGCAATAGCTCCAATAGTCAACAACAACAAGAAGCAACCAAGAAAAAAAGAAGCCTACCAGGAACCCCAGATCCAAATGCTGAAGTTATTGCTTTATCACCAACCACATTAATGGCAACAAATAGATTCGTCTGTGAGATCTGCAGCAAAGGGTTTCAGAGGGACCAAAACCTTCAGTTGCACCGCAGAGGTCACAATCTTCCATGGAAACTGAAGCAGAGAACAAGCAGTGAGGTGGTGAAGAAACGAGTGTATGTGTGCCCTGAGCCATCATGTGTTCACCACAACCCTGCTCGTGCATTAGGAGACCTCACTGGCATTAAAAAACACTACAGCAGAAAACATGGTGAGAAGAAATGGAAATGTGACAAGTGCTCCAAAAGATATGCTGTCCAATCTGATTGGAAGGCCCACCAGAAAACATGTGGCACCAAGGAATACAAATGTGATTGTGGCACCATTTTTTCCAGGAGAGATAGTTTCATCACCCACAGAGCTTTCTGTGATGCATTAACTGAAGAAAACAACAGAGTGAACCAGGGATTAACGAGTGGCATGGAACCAAACTCTCAAAATGAAGTGCCGGATCTCATAGCTACAATGCCCCTAAGCACTAGTTCCAACACTGTCTCTGAATTCAACAACCATGAACCTAGGAACCAACACAAAACCCTCTCCAATGAACTTGTCCCAATGCCATTCAAGTCCATGAGCATGTTTCCCCCCACTTCAGGCCCACTTTTTGGTGGTCCTAAAGGGATAGCATCTCCCTCTTCTTCTGGCCTTCAACTCAGCTCCAACAATTTCAATTACTTCCAAGACAGCAAAATTTCTGGCTCAGCTCACATGTCTGCAACAGCTTTGTTACAGAAAGCAGCACAAATGGGAGCCACTTCAAGCAATAGCTTGAACTCTCCAATGATGCAGAAAAGCTTTGTTAGTAGCATGGTTGGTCATAGTTCTTCATATGAACAGTTGCACCCCCAGCTTGATAAGTCCCACATAGCTGAGGCTAGTGGTGGTGGAACATTCACCAACCAATTTATTCAGAAAGGACAACAAGAAATGTCACAAATGTTTGATTCTAACAATGATATGAGGATGTTCACCCCGGTGGCTGGTGACATGACAATGGTTCATGACTTTTTGGGTGTTGGGGGTTCAGCTTCAAGAGCAGGGGAATTGTATGAACCACAAAAACAGCTACTGCAGCAAAGATCTGAGTTAGAAGCATTAACACACCAGAGGTTGCAAATTGCGAATCACGTTCCCTATAACCTTCCTGATGGGGATTCAGTTTAG 1440 0.4389 MSNVSGDERSFSSANTGEEVLQLKEQQLQHQDHPHGSISEPSDACNSNSSNSQQQQEATKKKRSLPGTPDPNAEVIALSPTTLMATNRFVCEICSKGFQRDQNLQLHRRGHNLPWKLKQRTSSEVVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTKEYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLTSGMEPNSQNEVPDLIATMPLSTSSNTVSEFNNHEPRNQHKTLSNELVPMPFKSMSMFPPTSGPLFGGPKGIASPSSSGLQLSSNNFNYFQDSKISGSAHMSATALLQKAAQMGATSSNSLNSPMMQKSFVSSMVGHSSSYEQLHPQLDKSHIAEASGGGTFTNQFIQKGQQEMSQMFDSNNDMRMFTPVAGDMTMVHDFLGVGGSASRAGELYEPQKQLLQQRSELEALTHQRLQIANHVPYNLPDGDSV* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1146 479 MobiDBLite consensus disorder prediction 1 24 - -
Lja5g1146 479 Gene3D Classic Zinc Finger 89 132 - -
Lja5g1146 479 SMART c2h2final6 89 111 IPR013087 -
Lja5g1146 479 SMART c2h2final6 166 186 IPR013087 -
Lja5g1146 479 SMART c2h2final6 131 161 IPR013087 -
Lja5g1146 479 MobiDBLite consensus disorder prediction 1 74 - -
Lja5g1146 479 Pfam Zinc finger, C2H2 type 89 111 IPR013087 -
Lja5g1146 479 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 410 - -
Lja5g1146 479 Gene3D Classic Zinc Finger 145 224 - -
Lja5g1146 479 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 1 410 - -
Lja5g1146 479 MobiDBLite consensus disorder prediction 32 62 - -
Lja5g1146 479 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Lja5g1146 479 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 111 IPR013087 -
Lja5g1146 479 SUPERFAMILY beta-beta-alpha zinc fingers 88 187 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1146 Lja-Chr5 11538400 11541808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1146 60 346 IDZ Gene Family AT3G50700 54.769 3.71e-109 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja5g1146 zf-C2H2 0.0082 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1146 - - gmx:100797943 604.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1146 5 11538400 11541808 Lja5g1146 5 11538400 11541808 ECH