Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1144 ATGGACTTGTACGGTCGGAGCCCCGCCGCCAGGAATGGATCCAACCCGGGGAATCAACCTGAATGGCGTTCACCGGCTACCGACACTGGCCTTGAAGAGTCGATGTGGCATTTGACGCTCGGTGGTGGTGGTGGTGGTGGCGAGCATTACCCGGAGCGACCTGGTGTGGCTAATTGTGTCTATTACATGCGGACTGGCTTCTGTGGATATGGTGGCAGGTGTCGTTACAATCACCCGCGTGATCGTGCTGCGGTTGCTGCGGCAGTAAGAGCTACAGGGGAGTACCCAGAACGGGCGGGGGAGCCTCCATGTCAGTATTATTTAAAAACTGGAACCTGTAAATTCGGCGCATCCTGTAGATTCCACCATCCCAAACATGGAGGTGGATATTTAAGCCAAGCTCCACTTAATGTTTATGGATACCCATTGCGACCGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAATGCAAATTTGGTTTAACTTGTAAATTCCATCATCCTCAACCTGCTGGCACATCAATGCCAGCATCTGCGCCTCAATTTTATCCACAGGTGCAGTCTCCTACAGTTCCTCTGCCTGAACAGTATGGAGGAGCTTCCACAAGCTTGAGAGTGGCTAGGCCTCCTATGTTGCCTGGTTCATATGTACAGGGGGCTTATGGTCCTGTACTTCTTTCTCCAGGGGTTGTTCCATTTCCTGGATGGAGTCCTTATTCGGCGCCTGTAAGTCCTGTATTGTCTCCTGGTGCTCAACCTGCAGTTGGGGCTACTTCTCTATATGGGGTGACTCAATTGTCCTCACCAACATCTGCTTTTGCTAGACCATACACTCCTCTGCCCTCTTCTACTGGCCCTTCAGGAAGTGGCCCAAATGAACAGGTATTTCCTGAGAGGCCTGGTGAACCTGAATGCCAATACTATTTGAGAACTGGGGATTGTAAATTTGGATTAGCTTGTCGATATCATCATCCTCGGGAACGGGTTATGGCACAACCACTTCTTAGCCCCATTGGTCTTCCTTTTCGTCCGGGGGTACAACCTTGTGCATTTTATTTACAAACTGGGCAGTGCAAGTTTGGCTCCGCGTGCAAATTTGACCATCCTTTGGGTTCCATGAGATACAGTCCATCCACATCTTCTCTTATTGATGTGCCAGTTGCACCATACCCAGTAGGATCCTTGCTGTCTAACTTGGCTCCTTTAACAGCATCTTCAGAGCTTCGGCCTGAACTGAAGTCTGGGTCCAAAAACGAATCCTTTTCCACCAGAATGCCTTCATCTGGAAATAGTTCTGGTGCTTCTGTTGGTTTAATTTTCTCACAAGGTGGGTCTGTCTCGCTATCTGATGTGCAACTCTCAACTCAGAGTTCTACCCCTCTAAACAGTAGCAGAAGCACCAGACAAAGTGGTGACATACGTTGA 1431 0.4941 MDLYGRSPAARNGSNPGNQPEWRSPATDTGLEESMWHLTLGGGGGGGEHYPERPGVANCVYYMRTGFCGYGGRCRYNHPRDRAAVAAAVRATGEYPERAGEPPCQYYLKTGTCKFGASCRFHHPKHGGGYLSQAPLNVYGYPLRPGEKECSYYLKTGQCKFGLTCKFHHPQPAGTSMPASAPQFYPQVQSPTVPLPEQYGGASTSLRVARPPMLPGSYVQGAYGPVLLSPGVVPFPGWSPYSAPVSPVLSPGAQPAVGATSLYGVTQLSSPTSAFARPYTPLPSSTGPSGSGPNEQVFPERPGEPECQYYLRTGDCKFGLACRYHHPRERVMAQPLLSPIGLPFRPGVQPCAFYLQTGQCKFGSACKFDHPLGSMRYSPSTSSLIDVPVAPYPVGSLLSNLAPLTASSELRPELKSGSKNESFSTRMPSSGNSSGASVGLIFSQGGSVSLSDVQLSTQSSTPLNSSRSTRQSGDIR* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1144 476 Gene3D - 132 178 - -
Lja5g1144 476 ProSiteProfiles Zinc finger C3H1-type profile. 144 172 IPR000571 GO:0046872
Lja5g1144 476 SUPERFAMILY CCCH zinc finger 56 82 IPR036855 GO:0046872
Lja5g1144 476 MobiDBLite consensus disorder prediction 453 476 - -
Lja5g1144 476 ProSiteProfiles Zinc finger C3H1-type profile. 53 81 IPR000571 GO:0046872
Lja5g1144 476 MobiDBLite consensus disorder prediction 410 438 - -
Lja5g1144 476 SMART c3hfinal6 345 372 IPR000571 GO:0046872
Lja5g1144 476 SMART c3hfinal6 98 125 IPR000571 GO:0046872
Lja5g1144 476 SMART c3hfinal6 53 80 IPR000571 GO:0046872
Lja5g1144 476 SMART c3hfinal6 144 171 IPR000571 GO:0046872
Lja5g1144 476 SMART c3hfinal6 301 328 IPR000571 GO:0046872
Lja5g1144 476 MobiDBLite consensus disorder prediction 277 293 - -
Lja5g1144 476 ProSiteProfiles Zinc finger C3H1-type profile. 345 373 IPR000571 GO:0046872
Lja5g1144 476 Gene3D - 48 126 - -
Lja5g1144 476 SUPERFAMILY CCCH zinc finger 102 126 IPR036855 GO:0046872
Lja5g1144 476 SUPERFAMILY CCCH zinc finger 347 376 IPR036855 GO:0046872
Lja5g1144 476 SUPERFAMILY CCCH zinc finger 146 172 IPR036855 GO:0046872
Lja5g1144 476 MobiDBLite consensus disorder prediction 277 299 - -
Lja5g1144 476 ProSiteProfiles Zinc finger C3H1-type profile. 301 329 IPR000571 GO:0046872
Lja5g1144 476 ProSiteProfiles Zinc finger C3H1-type profile. 98 126 IPR000571 GO:0046872
Lja5g1144 476 PANTHER PROTEIN PHOSPHATASE RELATED 18 459 - -
Lja5g1144 476 MobiDBLite consensus disorder prediction 11 25 - -
Lja5g1144 476 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 18 459 - -
Lja5g1144 476 MobiDBLite consensus disorder prediction 1 27 - -
Lja5g1144 476 Gene3D - 299 383 - -
Lja5g1144 476 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 146 171 IPR000571 GO:0046872
Lja5g1144 476 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 125 IPR000571 GO:0046872
Lja5g1144 476 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 347 371 IPR000571 GO:0046872
Lja5g1144 476 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 55 80 IPR000571 GO:0046872
Lja5g1144 476 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 303 328 IPR000571 GO:0046872
Lja5g1144 476 SUPERFAMILY CCCH zinc finger 305 330 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1144 Lja-Chr5 11517864 11522033 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1144 1 440 C2H2 Transcription Factor Family AT5G18550 52.193 1.11e-135 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja5g1144 zf-CCCH 1.3e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1144 - - lja:Lj5g3v1665190.1 966.452
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1144 5 11517864 11522033 Lja5g1144 5 11517864 11522033 ECH