Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1128 ATGTCGTTTCGGAGCATGATTCTCGACAGGAAGGGATTCGAGGTGAAGTTCAGCTATGGCACAAGATCCAAGTCAGAGTCAAAGAGTGACACCACCATAAAGGAGAGTTCTTTGATGGTGGTTGATGATGGGTTGAAGCAGAGTTGTTGGGCTAACATGCCACCAGAGCTTCTGAGAGATGTGCTCATGAGGATTGAAGCCTCTGAGCATAATTGGCCTGCCCGGAAGCATGTGGTGGCCTGTGCCGGCGTTTGCCGGAGCTGGAGAGACATCATGGAGGAAATTGTCAAACCGCCACAAATCTCAACCAAGTTGACATTTCCTATTTCCTTGAAGCAGCCTGGTCCAAGGGATTCTCTTCTTCAGTGCTATATTAAAAGAAATCGCAGCAACCAAACATATTATCTGTTTCTTGGTTTAAACCAAGCTTCAACTGACGATGGCAAGTTCCTTCTAGCTGCACGCAAGTGTCGGCATGCAACCCACACTGACTATATAATCTCTCTAAACCATGATGATGTGTCGAGAGGGAGTAGCACCTATATTGGGAAGTTGAGATCAAACTTTCTGGGCACCAAATTCACTGTGTATGATGCACACCCTCCAATTTGTGGAGCCAAAGTTACAAAGTCTCGTTCCACCAGGCTTGTTAGTCTCAAGCAAGTATCTCCAAGAGTTCCTGCAGGCAACTTTCCCATTGTGCATGTCTCATATGATCTGAATGTTTTGGGCTCTAGGGGCCCTAGAATAATGCAATGTGTTATGGATGCCATCCCTGCCTCAGCTGTTGAACCCGGAGGTTCGGCCCCAACACAGACTCAATTTCTTCATAGCAGAATTGACGCTTCTCCATCTATCCCGTTCTTCAGATCAAAATCAACCCGCATGGAGAACCTCCCATCTGTACCTTTAACTTGTCAAAATGAGGGGATGCTAGTATTAAAAAACAAATCCCCTAGGTGGCATGAACAACTCCAATGCTGGTGTCTGAACTTCAATGGGCGGGTGACAGTTGCTTCAGTTAAAAATTTCCAGCTGGTTGCTTCTCCTAGAAATGGAGTTTCTGAGCAGGCTCAGGAAAATGTTGTTCTACAATTCGGAAAAGTTGGAAAGGATGTGTTCACCATGGATTACCAATATCCAATCTCAGCCTTTGAAGCATTTGCAATATGCCTCAGCAGCTTTGACACCAAGATCGCTTGTGAATGA 1209 0.4566 MSFRSMILDRKGFEVKFSYGTRSKSESKSDTTIKESSLMVVDDGLKQSCWANMPPELLRDVLMRIEASEHNWPARKHVVACAGVCRSWRDIMEEIVKPPQISTKLTFPISLKQPGPRDSLLQCYIKRNRSNQTYYLFLGLNQASTDDGKFLLAARKCRHATHTDYIISLNHDDVSRGSSTYIGKLRSNFLGTKFTVYDAHPPICGAKVTKSRSTRLVSLKQVSPRVPAGNFPIVHVSYDLNVLGSRGPRIMQCVMDAIPASAVEPGGSAPTQTQFLHSRIDASPSIPFFRSKSTRMENLPSVPLTCQNEGMLVLKNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPRNGVSEQAQENVVLQFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1128 402 Gene3D Tubby Protein; Chain A 107 402 IPR025659 -
Lja5g1128 402 PANTHER TUBBY-LIKE F-BOX PROTEIN 3-RELATED 1 401 - -
Lja5g1128 402 PANTHER TUBBY-RELATED 1 401 - -
Lja5g1128 402 SUPERFAMILY Tubby C-terminal domain-like 99 402 IPR025659 -
Lja5g1128 402 Pfam F-box domain 50 95 IPR001810 GO:0005515
Lja5g1128 402 SUPERFAMILY F-box domain 43 92 IPR036047 GO:0005515
Lja5g1128 402 Pfam Tub family 111 397 IPR000007 -
Lja5g1128 402 ProSitePatterns Tub family signature 2. 387 402 IPR018066 -
Lja5g1128 402 PRINTS Tubby superfamily signature 165 181 IPR000007 -
Lja5g1128 402 PRINTS Tubby superfamily signature 181 205 IPR000007 -
Lja5g1128 402 PRINTS Tubby superfamily signature 332 348 IPR000007 -
Lja5g1128 402 PRINTS Tubby superfamily signature 314 331 IPR000007 -
Lja5g1128 402 PRINTS Tubby superfamily signature 359 378 IPR000007 -
Lja5g1128 402 PRINTS Tubby superfamily signature 230 257 IPR000007 -
Lja5g1128 402 PRINTS Tubby superfamily signature 380 402 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1128 Lja-Chr5 11313383 11317085 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1128 1 402 TUB Transcription Factor Family AT2G47900 71.981 0.0 597
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lja5g1128 Tub 6.9e-108 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1128 K19600 - gmx:100809257 733.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1128 5 11313383 11317085 Lja5g1128 5 11313383 11317085 ECH