Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1102 ATGAAGGATAAAGTGGATTCCCCTGTTACAGTGCTTGAGGATTATTTCAGGAGTTCAGATTCAGAATCAAGTTCTTCTAAAGAGGTTACAGCAGATTCTGAGTCTAGAGACATTTCAAAACCTTGTTCTAGGTGGCATTCATTTCTTCAATTGTTGAGGACCAAACCAAAAAATCAAATGGCCACATTGCATCCTCTCAATCTCTCCAGAAAAATGAGCAGGAGCATGAGGGAAACCATGCTCCCAAGTTGTTTCATTGATGCAACTTTATCCCCTTGCAGATCACCTTGGAAGATCTTCACTCATCATGATTTACAGGTTGCCACCAATTACTTTAGCCAAGAGAATTTGATTGGAAAGGGAGGTTATGCTGAAGTTTACAAAGGGTGTTTGCCAAATCATCAGCTAGTTGCAATCAAAAGGCTAACAAGAGGAACAACTGATGAAATCATAGGTGATTTCTTATCTGAACTTGGTGTGATGGCACATGTAAACCATCCAAATACTGCTAAGCTTGTTGGCTATGGTGTTGATGGAGGAATGCATATAGTTCTTGAATTGTCTGAGAAAGGAAGCCTAGCTTCAGTGCTTTATGGTTCTAATGAGAAACTACCATGGTGTATTAGGCACAATATTGCATTAGGAACAGCTAGGGGTCTATTATATCTTCATGAGGGTTGTCAAAGAAGAATAATCCATAGAGATATAAAAGCTGCAAACATATTGCTCACAGAAGACTATGAGCCTCAGATTTGTGATTTCGGGCTAGCAAAATGGCTACCAGAGAATTGGACTCACCATACCGTTGCAAAATTTGAAGGAACTTTTGGATACCTTGCTCCTGAATACTTACTTCATGGCATAGTGGATGAGAAAACAGATGTATTTGCCTTTGGTGTACTGCTATTGGAATTAGTCAGTGGGCGAAGAGCACTTGATTTTTCACAGCAAAGCCTTGTTTTGTGGGCAAAACCATTACTGAAAAAGAATGAAATTATGGAGCTGATTGATCCTTCACTAGCAGACGGCTTTGACTCTAGGCAGATGAATCTCATGCTCTTGGCAGCTTCTTTATGCATACAACAGTCCTCGATTCGTCGTCCCTCTATTCGACAGGAACGCGATACATTTCTTTTGAAATTTCAACATTATTTGACTTCAACTAGCAATTTAGATTACTAA 1182 0.3959 MKDKVDSPVTVLEDYFRSSDSESSSSKEVTADSESRDISKPCSRWHSFLQLLRTKPKNQMATLHPLNLSRKMSRSMRETMLPSCFIDATLSPCRSPWKIFTHHDLQVATNYFSQENLIGKGGYAEVYKGCLPNHQLVAIKRLTRGTTDEIIGDFLSELGVMAHVNHPNTAKLVGYGVDGGMHIVLELSEKGSLASVLYGSNEKLPWCIRHNIALGTARGLLYLHEGCQRRIIHRDIKAANILLTEDYEPQICDFGLAKWLPENWTHHTVAKFEGTFGYLAPEYLLHGIVDEKTDVFAFGVLLLELVSGRRALDFSQQSLVLWAKPLLKKNEIMELIDPSLADGFDSRQMNLMLLAASLCIQQSSIRRPSIRQERDTFLLKFQHYLTSTSNLDY* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1102 393 SUPERFAMILY Protein kinase-like (PK-like) 92 372 IPR011009 -
Lja5g1102 393 Pfam Protein kinase domain 113 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1102 393 ProSitePatterns Protein kinases ATP-binding region signature. 118 140 IPR017441 GO:0005524
Lja5g1102 393 ProSiteProfiles Protein kinase domain profile. 112 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1102 393 PANTHER OS08G0249100 PROTEIN 1 373 - -
Lja5g1102 393 Gene3D Phosphorylase Kinase; domain 1 89 186 - -
Lja5g1102 393 PANTHER PROTEIN KINASE FAMILY PROTEIN 1 373 - -
Lja5g1102 393 SMART serkin_6 112 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1102 393 Gene3D Transferase(Phosphotransferase) domain 1 189 383 - -
Lja5g1102 393 MobiDBLite consensus disorder prediction 16 39 - -
Lja5g1102 393 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1102 Lja-Chr5 11064267 11068326 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1102 99 381 Trihelix Transcription Factor Family AT1G68690 40.678 9.98e-65 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Lja5g1102 Pkinase 3.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1102 - - gmx:100780587 652.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1102 5 11064267 11068326 Lja1g0255 1 2182893 2186851 ECH
Lja5g1102 5 11064267 11068326 Lja5g1504 5 15817684 15820816 ECH
Lja5g1102 5 11064267 11068326 Lja5g1102 5 11064267 11068326 ECH
Lja1g1177 1 12065419 12071703 Lja5g1102 5 11064267 11068326 ECH
Lja6g2793 6 57017080 57020081 Lja5g1102 5 11064267 11068326 ECH
Lja1g1177 1 12065419 12071703 Lja5g1102 5 11064267 11068326 PCT