Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1100 ATGAACACCATCATAATCATAGTCATCAACCTCTTCACCATCATCTCCTCTGTTTCTGCTGCCACATGTCCCCTGAACTTCACTGTCCTCACCGCCATCAGCGGCGGCGCCAGACCCCAATACTTCGACTCCTCCGGCGGCGCAACCCGCTGCCAGTTCATCCACCAAGCTCTCCGCCTCGTCCAGTCAGACTACCTCCGCCGCACCTCCTCCTTCGTCCCTCCCCTGAACTCCTCTGAATCATGCTGGAGCTCGTTTCAATCCTACACCAACACCTTCGACCGCAACTTCGACATTCGCTCCTCCTGCGGCTACCAAACCTCTTGGATCTCTCAGGGTTGCGTCAATGTCACCACCAAGGAGCAATTCGAAACCCTAGTCCCTCAATCTTCGCTTCAAAACATGGCAGAAAAGTGCAACCAGACACTGGAAAACAACGCACCCTGCGCACTCTGCACCACCACTTTGTCGAAGTTACCATCTCTAGGCCAATCCATCGGGAACCTCTCCGATTGCACCGGTTATCCTTCCATCTACGCCGCCGCTTTTTCCAACCAGTTTGGACCCTCTGACCCCGGCACTGCCAAGTGCTTGTTTCAGCTCGATTTCACTTCTGGGGGTTCTTCTTCTGGGAAGAAAAGAGTCATTGTTATTGTTGTTGTTTCTGTTGTCTCTGTTTTGGTTTTGTCCCTTTTGGGTGTTGGGTTCTGGGCTTGGTTGAAATTCAATGATAAGGTGAATGAAGATAAGGATGTTAATCTTTCCGAGACCGGTTTGGTTTCGAGGTTGGAGTCTATGGATCAGAGTACTACTCTGATCAGGTTCTCAATTGATGATGTTAAGAAAGCTACTAAGAATTTCCATAGAGATAATATAATTGGGAGAGGGGGTTATGGGAATGTGTATAAAGGGTTGCTTCCTGATGGCTCCGAAGTTGCGTTGAAGCGGTTTAAGAATTGTTCTGCTGCTGGTGATGCTAGCTTCACTCATGAGGTTGAGGTTATAGCCAGCATTAGGCATGTGAACCTTGTTGCTTTGAGAGGCTATTGTTCCGCCACCACTCGTATGGAAGGTTACCAGAGGATTATTGTTTGTGATTTGATGAAAAATGGGAGCCTTCATGATTACTTGTTTGGTTCAATGGGGGTGAAACTAAGCTGGCCAACGCGACAGAGGATCGCGCTTGGCACAGCTAGGGGATTGGCTTATTTGCACTATGGGGCTCAGCCTGCAATCATCCATAGGGATATTAAAGCAAGTAACATTCTTCTGGATGAGAAGTTTGAAGCTAAAGTTGCTGACTTTGGACTAGCAAAGTTCAACCCTGAGGGTATGACTCATATGAGCACAAGGGTTGCTGGGACTATGGGGTATGTTGCTCCTGAGTATGCTTTGTATGGACAATTAACAGAGAGAAGTGATGTGTTTAGTTTTGGTGTTGTGCTTCTTGAGCTTTTGAGTGGAAAAAAGGCTCTTCAAATGAGTGATGATGGCCAGCCTTCTGCTTTGACTGATTGGGCTTGGTCATTGGTTAGAACAGGTAAACATCTGGATGTTATTGAGGATGGCATGCCAGAATGTGGTTCACCTGAACTTCTTGAGAAGTATGTTTTGATTGCTGTGCTTTGTTCTCATCCTCAGCTGTATGCTAGGCCAACAATGGATCAAGTTGTGAAAATGATGGAGACTGATGAATCAGTGCCCTCGATTCCACAACGGCCAATCCCTCTTGTAGCTGGGAGGCTTGATATAGAGAGATCTGTGAGCAGTAGCGGCTCTCTCTCGAGTCCCACCGGTTATCAGTCATATACTTTAGGAGATGGACTCCATTCTTCTAATTCTAGGGAAGAAAGAAACTCAAGCTCCAGAATTTTGAGTACAGATGAGAGTTGA 1893 0.4712 MNTIIIIVINLFTIISSVSAATCPLNFTVLTAISGGARPQYFDSSGGATRCQFIHQALRLVQSDYLRRTSSFVPPLNSSESCWSSFQSYTNTFDRNFDIRSSCGYQTSWISQGCVNVTTKEQFETLVPQSSLQNMAEKCNQTLENNAPCALCTTTLSKLPSLGQSIGNLSDCTGYPSIYAAAFSNQFGPSDPGTAKCLFQLDFTSGGSSSGKKRVIVIVVVSVVSVLVLSLLGVGFWAWLKFNDKVNEDKDVNLSETGLVSRLESMDQSTTLIRFSIDDVKKATKNFHRDNIIGRGGYGNVYKGLLPDGSEVALKRFKNCSAAGDASFTHEVEVIASIRHVNLVALRGYCSATTRMEGYQRIIVCDLMKNGSLHDYLFGSMGVKLSWPTRQRIALGTARGLAYLHYGAQPAIIHRDIKASNILLDEKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGKKALQMSDDGQPSALTDWAWSLVRTGKHLDVIEDGMPECGSPELLEKYVLIAVLCSHPQLYARPTMDQVVKMMETDESVPSIPQRPIPLVAGRLDIERSVSSSGSLSSPTGYQSYTLGDGLHSSNSREERNSSSRILSTDES* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1100 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 412 424 IPR008271 GO:0004672|GO:0006468
Lja5g1100 630 Pfam SPARK 19 164 IPR043891 -
Lja5g1100 630 Gene3D Transferase(Phosphotransferase) domain 1 368 569 - -
Lja5g1100 630 PANTHER RECEPTOR-LIKE KINASE IN IN FLOWERS PROTEIN 13 610 - -
Lja5g1100 630 Pfam Protein kinase domain 287 499 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1100 630 PANTHER OS01G0253100 PROTEIN 13 610 IPR045271 GO:0004714|GO:0006468
Lja5g1100 630 ProSiteProfiles Protein kinase domain profile. 287 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1100 630 SMART serkin_6 287 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1100 630 SUPERFAMILY Protein kinase-like (PK-like) 269 577 IPR011009 -
Lja5g1100 630 MobiDBLite consensus disorder prediction 588 630 - -
Lja5g1100 630 MobiDBLite consensus disorder prediction 588 610 - -
Lja5g1100 630 MobiDBLite consensus disorder prediction 611 630 - -
Lja5g1100 630 Gene3D Phosphorylase Kinase; domain 1 251 366 - -
Lja5g1100 630 ProSitePatterns Protein kinases ATP-binding region signature. 293 315 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1100 Lja-Chr5 11026155 11028588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1100 5 614 Receptor kinase-like Gene Family AT2G48010 63.474 0.0 796
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Lja5g1100 Pkinase 1.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1100 - - gmx:100800760 932.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1100 5 11026155 11028588 Lja5g1100 5 11026155 11028588 ECH
Lja1g1176 1 12055752 12057993 Lja5g1100 5 11026155 11028588 ECH