Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1089 ATGATTCCTTGGGGCGGTATCAGTTGTTGTTTGAGTGCTGCTGCTCTTTACCTTCTTGGCAGAAGCAGTGGCAGGGATGCGGAACTTCTTAAATCTGTGACACGGGTTAATCAGTTGAAGGAGCTAGCACAACTGTTGGATGCGGATATATTACCCTTGGTTGTTTCAATTTCTGGAAGAGTTGGTTCTGAAAACCCAATTAACTGTGAATTCAGCAGTTTAAGAGGCGCAATAGTTGAAGAAACAGCAGAGCAACATTTTCTTAAACACAATGATGCTGGTTCCTGGATACAAGATTCGGCTCTAATGCTATCCATGAGTAAAGAAGTTCCTTGGTATCTGGAAGATGGGACTGATCGTGTGCATGTAGTTGGAGCTCGAGGTGCCACTGGTTTTGTATTACCTGTTGGAAGTGAGGCATTTGAAGAGTCAGGTCGGTCACTTGTACGTGGAACATTGGACTATCTGCAAGGTCTTAAGATGCTTGGAGTTAAGAGAATTGAGCGGGTGCTTCCTATTGGAACTTCCTTGACTGTTGTTGGTGAGGCTGCTAAAGATGATATTGGGACCGTTCGAATTCAGCGACCCTACAAAGGGCCCTTCTATGTCACTCCAAAAACGATAGATCAACTCATTGCAAATCTCGGGAAATGGGCAAGGTGGTACAAGTATGCTTCAATGGGCTTGACAGTGTTCGGTGCTTATCTAATAGCTAAACATGCTATTCGGTACATCTTGGAAAGACAGCGCCGCAACGAAATGCAAAGAAGGGTTCTTGCTGCCGCTGCTGCTAAGAGGTTGGGACACGATAATGAAGGTGAAAAGGCTGACGGCTTAGTAGACAGTGCTAAAAGGGAACGCTTAATTCCAGATTTGTGTGTAATATGCCTTGAGAAGGAATATAATTCTGTTTTTGTTCCGTGTGGGCATATGTGCTGCTGTACAGGTTGCTCTTCACACTTGACCAGTTGTCCTCTTTGCCGGCGACAGATAGAGAAGGTCGTGAAGACTTTTCGCCATTGA 1023 0.4497 MIPWGGISCCLSAAALYLLGRSSGRDAELLKSVTRVNQLKELAQLLDADILPLVVSISGRVGSENPINCEFSSLRGAIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLEDGTDRVHVVGARGATGFVLPVGSEAFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPIGTSLTVVGEAAKDDIGTVRIQRPYKGPFYVTPKTIDQLIANLGKWARWYKYASMGLTVFGAYLIAKHAIRYILERQRRNEMQRRVLAAAAAKRLGHDNEGEKADGLVDSAKRERLIPDLCVICLEKEYNSVFVPCGHMCCCTGCSSHLTSCPLCRRQIEKVVKTFRH* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1089 340 CDD RING-HC_LRSAM1 292 331 - -
Lja5g1089 340 Pfam E3 Ubiquitin ligase 85 233 IPR022170 GO:0004842|GO:0006996|GO:0016567
Lja5g1089 340 Pfam Zinc finger, C3HC4 type (RING finger) 291 334 - -
Lja5g1089 340 PANTHER - 1 307 IPR044231 GO:0004842|GO:0016567
Lja5g1089 340 ProSiteProfiles Zinc finger RING-type profile. 293 328 IPR001841 -
Lja5g1089 340 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SP1-RELATED 1 307 - -
Lja5g1089 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 339 IPR013083 -
Lja5g1089 340 SUPERFAMILY RING/U-box 292 334 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1089 1 273 C3H Transcription Factor Family AT1G63900 75.636 2.01e-151 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1089 K15688 - gmx:100800734 610.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1089 5 10895428 10899584 Lja5g1089 5 10895428 10899584 ECH