Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1086 ATGAAAAGGATTCAAAATAGTCATCACATTGTAATGTGTATAAATGTACAAATTCAATTCACTTTCAATCCACATTTGCACCTTTCTCTTTTTACTAATCACTCTCATTTCACTCAATTCTTAATCTATCTTTATTTATTAGCTAATATGAATGTCAGAACGTGTAAAAAAGCGTCGAGAATTCAATGCTCTAGTGCAAAAGATGGTATTGTGGAGCTAACTATATCATCTTCCACCATGAGTAATGAGGATCCTGGAATTTCAGGCAGGCAATATAAAGATACTGTGATTTTTGGGTTTACTGACAGAATCCCTTCAGATGATGAAACAGACAATATATGTCTACAGACGGGTGAAGAATTTTCTGCTGAGTTCTTACGTGATCGGGTTGCTTTAACGAGATTTCCTGTCATAACTGATGCAGACCAGCAGCGCCTGCCAAACAGATTGGACTTTAATGTTAATAATAACAACTACCAGATGGTCTATGAGGATCTAAAGCATGTTCTTGGGCTAAGTAGAGAAAATTCTGATAGTAACCCGGATTTGTTAGAGACTGGTTTGGCCAGAGGATATGGTGCTGAGATTGACAACAGGGCTTATCCTAATAATTTGAGCAGATACCACTGGGAACATGGTGGTGTCGGACAGACATCAGGTACATTTTCTAGACAATTATCAAGTAAGTTTTCTGACGGATCTAGTTGTGATCAAGTTACTCCAGGACCAAATGCTCCTATTTACGCCATGGAGTCTCCTCATTCATGCCATCCTCACGGATCATTATTCTCAGAAGGTTCTTTCTATAAGAAGATAAAGTTTCTTTGTAGTTCTGGAGGTAGAATACTGCCAAGGCCAAATGATGGGAAACTCAGATATGTAGGTGGAGAGACACGGATTATATCAATCAGAAAGAACATCACATGGGAGGAGCTTATGACAAAGACTTCTGCTATATGTGATCAAACTCACATTATCAAATACCAGCTTCCTGGAGAGGATCTTGATGCTCTTATTTCTGTTTGTTCTGATGAGGATCTTCATCATATGATTGAGGAATATGAAGAGCTTGAAAGAGCTGGAGGCTCTCAACGACTGAGGATTTTTCTCATACTTGCAAATGAATCTGAGAGTCCAATCTCTAATGATGCAAGAGTCAATCCACCAAGTGATGCTGATTATCATTATTTTGTTGCTGTTAATGGTATGCTGGATCCAAGTCCACGAAAGAACCTTAGTGGTCTAAATTTGGCAAGCCATACAACCCAGTTTGGAAATAACTCTGATTACAACAGTCCACATTTCCATAGGGACTCATCCACATCTTCATTTGCTTCGGAGGCAAAGGACAACCCGACCTCTCCAAATTTGGTAGGAAAACTCTCAAAACGCCGTCCTCATTTGTTAACAGCACTGAAGGTAGCGGCCAATTCATTTAATCAAACACCTCCTCTATCTCCCATTTCTGTACAGCCGAAAGATTCTAAAATTTCTAATGTACAGCCTAAAGATCCAAAAATTTATAATGTACAGTTATTTAGGGACCAACCATATAATGTTGTTAACGAAAGCATTAGTCCCTTTGTTACGGAAAAAGATCCGCGTGAGAACTCTTTGTTTGTAGAGAATACCAGTTATGTTGATCCAATTGTGTATTATAACAGTCCTTCTCAAGGGTCTCCACGCGTGAATTACCATCCCAGTAATCAATACGTACTGGAGTCTGACCAAGTCAGGAAGCCTAGTGATGATTTTCATTTTCACAGACGAAACAACAGTAAAGATTTTGTCTCGCCTGCAATTTGTAGTCAAACTGATATGATATTTGAGAGACCTTTAGGCACCAATGAAGGTTCATACCATTTTAACAAGATTGTTTCTCATCCTCACGATCGATCGAGTTTATTCTCAGTATCTGATGGTAGAGAGGGATCTCAGTACAGAATATTGCATGCACTTTCTGACCCAATACTTGAGGAGAATGACGAGAACTATAAAGTTCGCATGCCATTTCCCCCTAATGCTGAGAGAGACAAAATGTCATCATGGGAAACTTCAAGTTCTTTGGAAGAATGTTCAATACAGCCAGGAGAGATAGCTAATAGGAAAGAGCATGTGGCTCAGTATCAAAACTTTCCCACTTTTGGAATGGCCGATAGTTTCCACAGAGTGTCAGAGATTGGTAAAGAGAACATGCAGCGTGCAGATAAAAGCACTAATTGGTTTGATGAAAAACTTGGACCAATGTCACAAGACAAAAATTTACAGTATATCTACTATCCACATGGTGTCTGCTCATCTTCACCAGATTTACAGAGTGATGAATGCAATGTGTCTGCTGGACCATATAACTCTTCGGAGTCCACAAGCAACATGACAGAGCAATCACATGGTCTACCATTAGATGTAATTTCTTCTCAGTTTTCCATGAGGAGCCAAAATTCATCAACGCATCACCGATATTCTATGTCAGAGCCAAAAGACAGTCAACCACTTCACCCTGGCTCTTCTGAGTTACAACCTGTTGAGTCCCAAACTGAAATAGAGTCCATGCCACCTGTCTCATACACAGACTTGGTTCATTCTTCATCGAGAGACGTTATCCTTGATGAGGATCATGCATGCCACCTGTACCAAAAGGAAGAAAGCACAGTCATTAACAAACAATCTTCTAAATACATTGATGAATTGTGTGTCAACAAGCCAGAACCGGTAGCTGCTGTCAAAGGGCCAATTGATTATATTACGTCAGGTATCCAGTCACGCTTACGAGTCTCAAATTTAGATGAAGAGGATGAAGTTGAACTAACATCTCCTGAGAGGGAAGAGGTAGAGTGTTTTAATCCAGAATCTGAAAGGAAGCTTGCAAAAGCTGATAGTGGAAACTTCTACACCCCTACCGGTGATACAGAAACTGTTGAAACAGAGGTTGATATTAATGGTTTACAGATTATTGAGAATGGTGATCTTGAAGAACAACAAGAGTTAGGATCTGGAACCTTTGGAACTGTTTATCATGGAAAGTGGAGGGGAACAGATGTTGCTATTAAAAGAATAAAAAGTAGTTGTTTCGCTGGCAGATTGTCAGAGCAAGAGCGGTTGACTAAAGATTTTTGGAGAGAGGCACGGATTCTGTCAACCCTTCACCATCCAAATGTGGTGGCATTTTATGGGGTAGTTCCTGATGGCCCAGGTGGAACGCTGGCAACTGTAACAGAATACATGGTGCATGGATCACTAAGGAATGTTCTCTTGAAGAAGGACAGAGTGCTTGACCGCCGTAAAAGGCTTATGATTGCAATGGATGCAGCCTTTGGCATGGAGTATTTGCATTTGAAAAATATTGTTCATTTTGATTTGAAGTGTGATAATTTACTTGTCAATCTGGGCGATCCTGAACGACCTGTATGTAAGGTTGGAGATTTTGGCTTATCAAGAATTAAACGCAACACGCTTGTTTCTGGTGGTGTCAGAGGAACCCTTCCATGGATGGCACCAGAATTACTAGATGGTAACAGTTCAAGGGTGTCTGAGAAGGTTGATATTTTCTCATTTGGCATTGCAATGTGGGAAATCTTGACTGGGGAAGAACCTTATGCTAATATGCACTGTGGTGCTATCATAGGAGGTATTGTCAATAATACGCTCAGGCCTCCAATCCCAAAACGCTGTGATTCTGAGTGGAAAAAGTTGATGGAAGAGTGCTGGAGTCCTGATCCTGCAGCCAGGCCAACCTTCACAGAAGTTAGAGATAGACTTCGCAACATAAACCTGCATTATCTCCCCTTATGGTGGCCTCGATTTGGAACCTCCATCACTGCTAATTTGGAACTTCCATCAAAGTCGTTGCGAGCTCCATCTCGCGGAATAATCGCCCAAACCTCCAAAATACAAAACCCCACCACATGCAAAACCTCTCCTCTCGATATTGGTCTCCAAACAATCGTTCCACCTAACTCGCGGCCAAACCTAACCACATTGGTCCACCACTCATCGGAACCTAGCCACCCACTCCAACCACGAGCCACCGCAAACCTCCCTCCCCCGTGGTCCAGCAAGGTAGCCTCCACCGTTGAAACACATTATGTCTCCCTCTACTCTACTCATCATGATTGCTAG 4119 0.4127 MKRIQNSHHIVMCINVQIQFTFNPHLHLSLFTNHSHFTQFLIYLYLLANMNVRTCKKASRIQCSSAKDGIVELTISSSTMSNEDPGISGRQYKDTVIFGFTDRIPSDDETDNICLQTGEEFSAEFLRDRVALTRFPVITDADQQRLPNRLDFNVNNNNYQMVYEDLKHVLGLSRENSDSNPDLLETGLARGYGAEIDNRAYPNNLSRYHWEHGGVGQTSGTFSRQLSSKFSDGSSCDQVTPGPNAPIYAMESPHSCHPHGSLFSEGSFYKKIKFLCSSGGRILPRPNDGKLRYVGGETRIISIRKNITWEELMTKTSAICDQTHIIKYQLPGEDLDALISVCSDEDLHHMIEEYEELERAGGSQRLRIFLILANESESPISNDARVNPPSDADYHYFVAVNGMLDPSPRKNLSGLNLASHTTQFGNNSDYNSPHFHRDSSTSSFASEAKDNPTSPNLVGKLSKRRPHLLTALKVAANSFNQTPPLSPISVQPKDSKISNVQPKDPKIYNVQLFRDQPYNVVNESISPFVTEKDPRENSLFVENTSYVDPIVYYNSPSQGSPRVNYHPSNQYVLESDQVRKPSDDFHFHRRNNSKDFVSPAICSQTDMIFERPLGTNEGSYHFNKIVSHPHDRSSLFSVSDGREGSQYRILHALSDPILEENDENYKVRMPFPPNAERDKMSSWETSSSLEECSIQPGEIANRKEHVAQYQNFPTFGMADSFHRVSEIGKENMQRADKSTNWFDEKLGPMSQDKNLQYIYYPHGVCSSSPDLQSDECNVSAGPYNSSESTSNMTEQSHGLPLDVISSQFSMRSQNSSTHHRYSMSEPKDSQPLHPGSSELQPVESQTEIESMPPVSYTDLVHSSSRDVILDEDHACHLYQKEESTVINKQSSKYIDELCVNKPEPVAAVKGPIDYITSGIQSRLRVSNLDEEDEVELTSPEREEVECFNPESERKLAKADSGNFYTPTGDTETVETEVDINGLQIIENGDLEEQQELGSGTFGTVYHGKWRGTDVAIKRIKSSCFAGRLSEQERLTKDFWREARILSTLHHPNVVAFYGVVPDGPGGTLATVTEYMVHGSLRNVLLKKDRVLDRRKRLMIAMDAAFGMEYLHLKNIVHFDLKCDNLLVNLGDPERPVCKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLDGNSSRVSEKVDIFSFGIAMWEILTGEEPYANMHCGAIIGGIVNNTLRPPIPKRCDSEWKKLMEECWSPDPAARPTFTEVRDRLRNINLHYLPLWWPRFGTSITANLELPSKSLRAPSRGIIAQTSKIQNPTTCKTSPLDIGLQTIVPPNSRPNLTTLVHHSSEPSHPLQPRATANLPPPWSSKVASTVETHYVSLYSTHHDC* 1373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1086 1372 CDD STKc_MAP3K-like 996 1253 - -
Lja5g1086 1372 MobiDBLite consensus disorder prediction 425 460 - -
Lja5g1086 1372 MobiDBLite consensus disorder prediction 771 796 - -
Lja5g1086 1372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1115 1127 IPR008271 GO:0004672|GO:0006468
Lja5g1086 1372 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 157 1256 - -
Lja5g1086 1372 MobiDBLite consensus disorder prediction 425 458 - -
Lja5g1086 1372 Pfam Protein tyrosine and serine/threonine kinase 991 1253 IPR001245 GO:0004672|GO:0006468
Lja5g1086 1372 ProSiteProfiles Protein kinase domain profile. 990 1261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1086 1372 SUPERFAMILY Protein kinase-like (PK-like) 983 1252 IPR011009 -
Lja5g1086 1372 SMART PB1_new 286 373 IPR000270 GO:0005515
Lja5g1086 1372 Gene3D Phosphorylase Kinase; domain 1 983 1077 - -
Lja5g1086 1372 ProSitePatterns Protein kinases ATP-binding region signature. 996 1017 IPR017441 GO:0005524
Lja5g1086 1372 Gene3D Transferase(Phosphotransferase) domain 1 1078 1262 - -
Lja5g1086 1372 SUPERFAMILY CAD & PB1 domains 287 376 - -
Lja5g1086 1372 PRINTS Tyrosine kinase catalytic domain signature 1224 1246 IPR001245 GO:0004672|GO:0006468
Lja5g1086 1372 PRINTS Tyrosine kinase catalytic domain signature 1072 1085 IPR001245 GO:0004672|GO:0006468
Lja5g1086 1372 PRINTS Tyrosine kinase catalytic domain signature 1109 1127 IPR001245 GO:0004672|GO:0006468
Lja5g1086 1372 PRINTS Tyrosine kinase catalytic domain signature 1180 1202 IPR001245 GO:0004672|GO:0006468
Lja5g1086 1372 MobiDBLite consensus disorder prediction 829 850 - -
Lja5g1086 1372 MobiDBLite consensus disorder prediction 1328 1350 - -
Lja5g1086 1372 PANTHER SERINE-THREONINE PROTEIN KINASE 157 1256 - -
Lja5g1086 1372 MobiDBLite consensus disorder prediction 809 850 - -
Lja5g1086 1372 Gene3D - 290 373 - -
Lja5g1086 1372 Pfam PB1 domain 287 370 IPR000270 GO:0005515
Lja5g1086 1372 CDD PB1_UP2 275 371 - -
Lja5g1086 1372 SMART serkin_6 990 1261 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1086 Lja-Chr5 10875507 10885526 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1086 115 419 MAP Kinase Kinase Kinase AT1G16270 38.436 1.50e-41 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Lja5g1086 PK_Tyr_Ser-Thr 1e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1086 - - aprc:113872358 1707.19