Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1077 ATGTCGTCTGGGCAAGTGGTTAAGCGTGCCAAATACAAAACCACCGTGAAAGGTCCTGGCACTCCTGGTATTCTCAAATTGACTCAAGATAAGTTTGTTTTCAAGCCTAATGATCCTACCTCAAACAACAAGCTCGACGTCGAGTTCAGATTTATAAAAGGTCATAGAGTTACGAAAGAGGGATCGAAACAACCGTTGCTTAACCTTACCCATGCCCAGGGAAGTTACATCTTTGAGTTAGAAAGCTTTCCAGATCTTCATGTTTGTCGGGAGTTGGTGGGTAATGCCCTTAGCAAGCATGTAGAAGCTCCAAAAGTTACTACTGAGGAACAGCTTAGCACTGCTGAACTGACACTCAGGTTGAAACTATTGCAAGAAGATAGTAAGTTGCAGAAACTTTTTAAGGAACTCGTGGCTGGTGGTAAGCTTACCGAATCAGAATTTTGGGCTACAAAGAAGAAAATGCTGGATCAAGATGAAAGCAGAAAGTCAAAACAACGGATTGGTTTTAAAAATTCTTTGATCTTTGACACAAAGCCTACTAGTGATGGTCGGATAAATCAGGTTAAATTTCAGTTGACACCAGAGATAAAATATCAGATTTTTGCCCTTAAACCAGCTGTTCACCAGGCTTTTTTCAATTTTGTTCCTAAGAAGATGACTGAGGTTGATTTTTGGAACAAATACTTCAAAGCTGAATATCTCCATAGTACCAAAAATATTATTGCTGCAGCTGCTGAGGCTGCTGAAGATGAGGATCTTGCTGTTTTTTTGAAAGATGATGAGATATTAGAAATTGAAGCCCGAAAGAAGGTTCGACGGGTTGATCCAACTTTAGACATGGAAGCAGACCAAGGAGATGATTACACTCATCTTCCTGATCACGGGATCTTCCGCGATGGCAGCAAGGAAATACCTGAAGCTCAACATCCCTTGTATAGGAGAACATTGTTACAAGATCTTAACAGACAAGGTGCAGTAGTTCTCGAAGGAAAAACTTTAGATATGGAAACGGAACAACCAAGAACAGTGGCAGAAGTTATTGCACGGAGACAACAGGAATCTGATGGAGTTAGAGAGGAGGAGAGACGAAACAGAATTTCTAAGATGACCCAGATTGAGGATCTGCAGGCACAAGATGATCATCCTTTTGCACCACTCTGTATTAAGGATCCTCGTGACTACTTTGATTCCCAGCAAGCTAATGCAGTAAAAACTTTGGATGATTCCCTAGCTGGAATGGAACAAACAAGATGTAGTTTGGGTTCTGAGGAAGCCTATGGCTCTTTGAGGGCATCCATATCTAAGATCAAAGCTAAAGGATTAAAGGATCCTCTACTTAGTCCTGAGGTTGCTCTTAAGGTCCTTAATGGATTGACAAAAAATATTTCAAGCACCAAATCTCATCTTGGAAAAAATTCTCAGGAGAGTGTCCTTGATTTATTGCCCAGCACAACGAAGGAGAAGCTACTAGATCATTGGGTGTGCAGTCAGGAATTGCTGAGGCACTTTTGGTCTTCCTATCCAATAACAGCACAAAACCTTATTAGTAAGACAGCGAGACTGAAAGAGGCTATATCACAAATTTACTCTAAACTTGAGGAAATAAAGGTATCTGCACAGTCAGACCTGCGGCATCAGGTTTCGCTTATTGTCCATCCTATGCAGCAGGCTTTGGATGCTGCCTTGTTACATTATGATGCTGACATTAAGAAAAGAAATGCAAGAGGACAGAAGCCTAATGGTGTTTAG 1752 0.411 MSSGQVVKRAKYKTTVKGPGTPGILKLTQDKFVFKPNDPTSNNKLDVEFRFIKGHRVTKEGSKQPLLNLTHAQGSYIFELESFPDLHVCRELVGNALSKHVEAPKVTTEEQLSTAELTLRLKLLQEDSKLQKLFKELVAGGKLTESEFWATKKKMLDQDESRKSKQRIGFKNSLIFDTKPTSDGRINQVKFQLTPEIKYQIFALKPAVHQAFFNFVPKKMTEVDFWNKYFKAEYLHSTKNIIAAAAEAAEDEDLAVFLKDDEILEIEARKKVRRVDPTLDMEADQGDDYTHLPDHGIFRDGSKEIPEAQHPLYRRTLLQDLNRQGAVVLEGKTLDMETEQPRTVAEVIARRQQESDGVREEERRNRISKMTQIEDLQAQDDHPFAPLCIKDPRDYFDSQQANAVKTLDDSLAGMEQTRCSLGSEEAYGSLRASISKIKAKGLKDPLLSPEVALKVLNGLTKNISSTKSHLGKNSQESVLDLLPSTTKEKLLDHWVCSQELLRHFWSSYPITAQNLISKTARLKEAISQIYSKLEEIKVSAQSDLRHQVSLIVHPMQQALDAALLHYDADIKKRNARGQKPNGV* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1077 583 PANTHER TRANSCRIPTION INITIATION FACTOR IIH-RELATED 4 573 IPR027079 GO:0000439|GO:0006289|GO:0006351
Lja5g1077 583 SMART wurzfinal6 185 237 IPR005607 -
Lja5g1077 583 SMART wurzfinal6 102 160 IPR005607 -
Lja5g1077 583 SUPERFAMILY BSD domain-like 185 237 IPR035925 -
Lja5g1077 583 Coils Coil 359 379 - -
Lja5g1077 583 ProSiteProfiles BSD domain profile. 185 237 IPR005607 -
Lja5g1077 583 ProSiteProfiles BSD domain profile. 102 160 IPR005607 -
Lja5g1077 583 SUPERFAMILY BSD domain-like 110 156 IPR035925 -
Lja5g1077 583 Pfam BSD domain 187 239 IPR005607 -
Lja5g1077 583 Pfam TFIIH p62 subunit, N-terminal domain 21 82 IPR013876 -
Lja5g1077 583 Gene3D - 114 154 - -
Lja5g1077 583 SUPERFAMILY PH domain-like 7 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1077 Lja-Chr5 10834299 10845501 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BSD Lja5g1077 PH_TFIIH 2.1e-06 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1077 K03141 - gmx:100776016 978.008