Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1073 ATGGAACATACATTTCCCAAGATGGAAATCTTCACCCAAAAGGAATTGCCAACTTGTTTGCAAGAAATGGCAACAGGGTCCAAGTTTTTGGACTATGCAATTATAAGGTCTCCCACTCTGACTTCTTCTCATCATGTTCATGTGTTAAGAAGTGAGGAAAACTCATCAATAGCATCATCTCCTGAAAAGCTTCTTTCATGTCCAGATTCTAGTTCAATGAAAGAAGAGGTACCTTTAGCCACTTTGATTAGTCATCATAGCCCTGCAAAGTTCAATGATCCTGAAGACATGGAGAATGGAAAAGCCAAAAAACAACCCCTTTCAGGATTCAATTCTACCACCACCCCTAGTTTTGTCCCAGCCTCAGATATAAAACATAGCTCTATTCCTCTAAATCTTCTGGAAACTCTCCCAGCATTAACCACTGCACTAGTTTCTGATGACCCAGCAGCTTCTTCTTCTTCTGCTCCACCCAAATTTCCAAACTTAACTTTGTTTTTGCAGGAACCTTCCATGCTGTACTCATCACCCTCACATATCAAAGGTGTTGAAGTCATGCCAGAAACTTCAGACCCCACATTTCCTGTGTCCCAGTTCAGTCAAACAATTCATCAAACAGGTGGTGATCATTCAGACAAAATGAAATCATTCAATGACAAATGGTTGAGCACCACCAGGACTCAGCCTTTGAAGCTTAGTGGAAGAGGAAAGCAGTTCAAAGGGGTGAGGCAGAGGCAATGGGGGAAATGGGTTGCAGAGATTAGATTACCAAGAAACAGGACAAGGGTTTGGCTGGGGACTTTTGACACAGCTGAAGAAGCTGCCATTGCATATGACACAGCAGCATACATACTGAGAGGAGAGTATACTCAGCTGAATTTCCCAGATCTAAAGCATGTGATTCAGGCTAATTCATTGAATGGAACCACTGCTGCACTTGTGGAGGCAAAACTGCAAGCAATATCACAAGCAGGGTCAAACAATAAGCCAAGTGATGAGAATGGCAAATTGAAAAGTCAAAAAAATAGAAAGGATTCAAGTTCAACCATGAAGGAGTGGGAATTTGATATAAAGAACAAGGTTGGAGCTGAATCCTCTGAGAGAAGCAAAAACACACATCATGAGATGTCTGATGTGGAAGCTGTTCAGTTAAGTAGAATGCCTTCATTAGACATGGATATGATTTGGGATGAACTTTTAGTTTCTGATTCATAA 1215 0.4123 MEHTFPKMEIFTQKELPTCLQEMATGSKFLDYAIIRSPTLTSSHHVHVLRSEENSSIASSPEKLLSCPDSSSMKEEVPLATLISHHSPAKFNDPEDMENGKAKKQPLSGFNSTTTPSFVPASDIKHSSIPLNLLETLPALTTALVSDDPAASSSSAPPKFPNLTLFLQEPSMLYSSPSHIKGVEVMPETSDPTFPVSQFSQTIHQTGGDHSDKMKSFNDKWLSTTRTQPLKLSGRGKQFKGVRQRQWGKWVAEIRLPRNRTRVWLGTFDTAEEAAIAYDTAAYILRGEYTQLNFPDLKHVIQANSLNGTTAALVEAKLQAISQAGSNNKPSDENGKLKSQKNRKDSSSTMKEWEFDIKNKVGAESSERSKNTHHEMSDVEAVQLSRMPSLDMDMIWDELLVSDS* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1073 404 PRINTS Ethylene responsive element binding protein signature 239 250 IPR001471 GO:0003700|GO:0006355
Lja5g1073 404 PRINTS Ethylene responsive element binding protein signature 261 277 IPR001471 GO:0003700|GO:0006355
Lja5g1073 404 MobiDBLite consensus disorder prediction 334 380 - -
Lja5g1073 404 SUPERFAMILY DNA-binding domain 238 296 IPR016177 GO:0003677
Lja5g1073 404 Gene3D AP2/ERF domain 237 296 IPR036955 GO:0003700|GO:0006355
Lja5g1073 404 ProSiteProfiles AP2/ERF domain profile. 238 295 IPR001471 GO:0003700|GO:0006355
Lja5g1073 404 Pfam AP2 domain 238 287 IPR001471 GO:0003700|GO:0006355
Lja5g1073 404 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF062 9 403 - -
Lja5g1073 404 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 9 403 - -
Lja5g1073 404 MobiDBLite consensus disorder prediction 52 67 - -
Lja5g1073 404 MobiDBLite consensus disorder prediction 51 70 - -
Lja5g1073 404 MobiDBLite consensus disorder prediction 324 384 - -
Lja5g1073 404 CDD AP2 237 297 IPR001471 GO:0003700|GO:0006355
Lja5g1073 404 SMART rav1_2 238 301 IPR001471 GO:0003700|GO:0006355
Lja5g1073 404 MobiDBLite consensus disorder prediction 87 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1073 Lja-Chr5 10807639 10808972 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1073 58 399 AP2-EREBP Transcription Factor Family AT4G13620 40.000 6.27e-62 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja5g1073 AP2 2.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1073 - - gmx:100820013 483.411