Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1066 ATGACAACATCAGAAGAAATTTATAGTTTAAAATTTTTGAGCCAGCATCTCTTAGGGGATATTTCAGACTCTTACCTCACCAATCTCATTCCTGTGAAACTTGAAGACTCATCATCAGAATTTGACTTGGATTCACTTTTCTCAGAACAGAGCAGCTTCTGCACTTTTCTTGAAAGCTTTAGCTTCCAAGCAGATACAGAAGTTGCCATGTCTCATGAGGCAAAGAATTCAATTACACCGACTCATTCAGGGGAAACCCAGAAGTCCAGTTCACCTGAACCAGAGGTTTCAGGGAAACAGGAGCAAACTTGTTATCAGGGAAGGCGTTACAGGGGAGTGAGGAGAAGGCCATGGGGTAAGTTTGCTGCAGAGATTCGTGACCCAACAAGGAAAGGGACTAGAGTGTGGCTTGGAACATTTGACACTGAGATTGATGCTGCAAAGGCTTATGATTATGCTGCTTTCAGGATGAGGGGTCGGAAAGCCATATTGAATTTCCCTTTGGAGGCTGGGAAGGCTAGCCCAAAGCCTAGCAATAGTGGAAGGAAAAGGGGGAGAGAACAGAGAGAGTCTGGTACAAGTTCAAGTCATGTTATGTCATGA 603 0.4411 MTTSEEIYSLKFLSQHLLGDISDSYLTNLIPVKLEDSSSEFDLDSLFSEQSSFCTFLESFSFQADTEVAMSHEAKNSITPTHSGETQKSSSPEPEVSGKQEQTCYQGRRYRGVRRRPWGKFAAEIRDPTRKGTRVWLGTFDTEIDAAKAYDYAAFRMRGRKAILNFPLEAGKASPKPSNSGRKRGREQRESGTSSSHVMS* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1066 200 CDD AP2 117 167 IPR001471 GO:0003700|GO:0006355
Lja5g1066 200 MobiDBLite consensus disorder prediction 76 104 - -
Lja5g1066 200 MobiDBLite consensus disorder prediction 168 200 - -
Lja5g1066 200 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700|GO:0006355
Lja5g1066 200 PRINTS Ethylene responsive element binding protein signature 149 169 IPR001471 GO:0003700|GO:0006355
Lja5g1066 200 SUPERFAMILY DNA-binding domain 109 169 IPR016177 GO:0003677
Lja5g1066 200 ProSiteProfiles AP2/ERF domain profile. 109 167 IPR001471 GO:0003700|GO:0006355
Lja5g1066 200 SMART rav1_2 109 173 IPR001471 GO:0003700|GO:0006355
Lja5g1066 200 MobiDBLite consensus disorder prediction 76 105 - -
Lja5g1066 200 Gene3D AP2/ERF domain 108 169 IPR036955 GO:0003700|GO:0006355
Lja5g1066 200 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 190 - -
Lja5g1066 200 Pfam AP2 domain 109 159 IPR001471 GO:0003700|GO:0006355
Lja5g1066 200 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 5 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1066 Lja-Chr5 10766806 10767867 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1066 107 186 AP2-EREBP Transcription Factor Family AT5G07580 72.500 1.34e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja5g1066 AP2 1.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1066 - - gmx:100499732 251.136